Browse Element(s) Details


Os.26789.1.A1_at

Description gb:CB659419
DB_XREF= gi:29663144
DB_XREF=OSJNEc16G07.r
CLONE=OSJNEc16G07
TID=Os.26789.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26789 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g427701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42750Os.20602.2.S1_x_at11/1112+26529396..26531016hAT family dimerisation domain containing protein
LOC_Os12g42760Os.14561.1.S1_at11/1112+26544405..26547383Type IIB DNA topoisomerase family protein, expressed
LOC_Os12g42770OsAffx.7871.1.S1_x_at10/1112+26550292..26551574hypothetical protein
LOC_Os12g42770OsAffx.7871.1.S1_at8/1112+26550292..26551574hypothetical protein
LOC_Os12g42770Os.26789.1.A1_at1/1112+26550292..26551574hypothetical protein
LOC_Os12g42780NANA12+26553621..26553929hypothetical protein
LOC_Os12g42790NANA12+26558486..26559883retrotransposon protein, putative, unclassified
LOC_Os12g42800NANA12+26560923..26561606retrotransposon protein, putative, unclassified
LOC_Os12g42810Os.24397.1.S1_at9/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_x_at4/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42810OsAffx.30686.1.S1_at1/1112+26566157..26571161Mov34/MPN/PAD-1 family protein, expressed
LOC_Os12g42820OsAffx.32163.2.S1_at11/1112+26575887..26577989hypothetical protein
LOC_Os12g42820OsAffx.32163.2.S1_x_at11/1112+26575887..26577989hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26789.1.A1_at--342--4272Chr11:27222281..27222305 (25 bp)
CCGGCGCCATCAACACATGGAAAGT
NONE
Os.26789.1.A1_at--427--10571Chr11:27222621..27222645 (25 bp)
TTCTTTCATCTCCTGTCACGCTGCT
NONE
Os.26789.1.A1_at--415--8431NONE
GGCCAATTGGCCTATACCCTAGGGA
NONE
Os.26789.1.A1_at--78--8431NONE
GGCCTATACCCTAGGGATGCAAGGA
NONE
Os.26789.1.A1_at--315--10271NONE
TTTCCCAAATGGGTTGCAAAGGTCG
NONE
Os.26789.1.A1_at--811--5131Chr11:27224293..27224317 (25 bp)
GCAAAGGTCGAGGATATCTCATTCG
NONE
Os.26789.1.A1_at--1048--452Chr11:27224308..27224332 (25 bp)
ATCTCATTCGATTTGCTGGCATTAG
NONE
Os.26789.1.A1_at--414--4052Chr11:27224316..27224340 (25 bp)
CGATTTGCTGGCATTAGAATTCAGA
NONE
Os.26789.1.A1_at--830--1471Chr11:27224338..27224362 (25 bp)
AGAATAGTTGTCTGATCACCTTCCA
NONE
Os.26789.1.A1_at--1124--8831Chr11:27224350..27224374 (25 bp)
TGATCACCTTCCAGTTGTCTTGCTT
NONE
Os.26789.1.A1_at--403--1251Chr11:27224362..27224386 (25 bp)
AGTTGTCTTGCTTTCATCCTATTTC
NONE
Target Sequence 
CCGGCGCCATCAACACATGGAAAGTCTGCCCATCCTCAACAAAATGAAACCCCTGACAAGGAGAATGATGCTTCCGCAGT
CACACAGCCCAGTCCACGAACCAACATAGCCCATCTCACTCGCCGCAGCTCCACTCTTCTTTCATCTCCTGTCACGCTGC
TGTACTTGGCCAATTGGCCTATACCCTAGGGATGCAAGGACTTTTCAGTCGTACCGCCTCTCCATTCCAAGATATTATAG
TTGGGAAGTATGAGAGTGCTTTGCTCTGCTTAGGTAACTTGCACTGTTATTTTGGACATCCGAAGAAAGCCTTATAGGCA
TTCACAGAAGCAGTGCGTGTTTCCCAAATGGGTTGCAAAGGTCGAGGATATCTCATTCGATTTGCTGGCATTAGAATTCA
GAATAGTTGTCTGATCACCTTCCAGTTGTCTTGCTTTCATCCTATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26789.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis