Browse Element(s) Details


OsAffx.29729.1.S1_at

Description tigr:9637.m00385
TID=OsAffx.29729.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g194501/11hypothetical protein
LOC_Os03g013401/11transposon protein, putative, unclassified
LOC_Os12g428841/115-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os11g271701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19420NANA11+11141225..11145751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19430NANA11+11151535..11157025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19440NANA11+11160306..11161732transposon protein, putative, unclassified
LOC_Os11g19450OsAffx.7153.1.S1_at9/1111+11170223..11174667hypothetical protein
LOC_Os11g19450Os.50.4.S1_at1/1111+11170223..11174667hypothetical protein
LOC_Os11g19450OsAffx.29729.1.S1_at1/1111+11170223..11174667hypothetical protein
LOC_Os11g19454NANA11+11177360..11179141hypothetical protein
LOC_Os11g19460Os.16631.1.S1_x_at11/1111+11180055..11185011haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g19460OsAffx.31060.1.S1_s_at11/1111+11180055..11185011haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g19470NANA11+11188542..11188862hypothetical protein
LOC_Os11g19480Os.51067.1.S1_x_at11/1111+11190348..11192066Leucine Rich Repeat family protein, expressed
LOC_Os11g19490Os.55572.1.S1_at11/1111+11199239..11201659Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009086biological_processmethionine biosynthesis
GO:0005829cellular_componentcytosol
GO:0003871molecular_function5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29729.1.S1_at--805--9918Chr09:2997120..2997144 (25 bp)
TACGTAGTACGACATCAAAGCAGAC
NONE
OsAffx.29729.1.S1_at--720--6933Chr12:26621967..26621990 (24 bp)
GTAGTACGACATCAAAGCAGACAAA
LOC_Os12g42884
OsAffx.29729.1.S1_at--69--215111Chr12:4355348..4355372 (25 bp)
ACAAAAGACAAGGATTATACTGGTT
NONE
OsAffx.29729.1.S1_at--677--78912Chr12:4388864..4388936 (25 bp)
GGTTCAGGCCCCTTGTCAGATTACA
NONE
OsAffx.29729.1.S1_at--738--9639Chr09:2997167..2997239 (25 bp)
TCAGGCCCCTTGTCAGATTACAAAG
NONE
OsAffx.29729.1.S1_at--500--8415Chr09:2997170..2997242 (25 bp)
GGCCCCTTGTCAGATTACAAAGAGA
NONE
OsAffx.29729.1.S1_at--288--1072Chr09:3041712..3041736 (25 bp)
AGGGATTCGACAAGACCTCCCGGCA
NONE
OsAffx.29729.1.S1_at--432--6532Chr09:3041715..3041739 (25 bp)
GATTCGACAAGACCTCCCGGCAAGT
NONE
OsAffx.29729.1.S1_at--258--2772Chr09:2997291..2997315 (25 bp)
AAGACCTCCCGGCAAGTCGGCTCTG
NONE
OsAffx.29729.1.S1_at--569--2851Chr09:2997304..2997328 (25 bp)
AAGTCGGCTCTGCATACTCCGGCTT
NONE
OsAffx.29729.1.S1_at--1125--3931Chr09:2997308..2997332 (25 bp)
CGGCTCTGCATACTCCGGCTTCGTA
NONE
Target Sequence 
TACGTAGTACGACATCAAAGCAGACAAAAGACAAGGATTATACTGGTTCAGGCCCCTTGTCAGATTACAAAGAGAGTAAC
TGAAACAGGCGATACCGACGAGATCGTAGTCGAGGGATTCGACAAGACCTCCCGGCAAGTCGGCTCTGCATACTCCGGCT
TCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis