Browse Element(s) Details


Os.16631.1.S1_x_at

Description gb:AK060426.1
DB_XREF= gi:32970444
TID=Os.16631.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.16631 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-010-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-H10, full insert sequence.
FL= gb:AK060426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1946011/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19430NANA11+11151535..11157025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19440NANA11+11160306..11161732transposon protein, putative, unclassified
LOC_Os11g19450OsAffx.7153.1.S1_at9/1111+11170223..11174667hypothetical protein
LOC_Os11g19450Os.50.4.S1_at1/1111+11170223..11174667hypothetical protein
LOC_Os11g19450OsAffx.29729.1.S1_at1/1111+11170223..11174667hypothetical protein
LOC_Os11g19454NANA11+11177360..11179141hypothetical protein
LOC_Os11g19460Os.16631.1.S1_x_at11/1111+11180055..11185011haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g19460OsAffx.31060.1.S1_s_at11/1111+11180055..11185011haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g19470NANA11+11188542..11188862hypothetical protein
LOC_Os11g19480Os.51067.1.S1_x_at11/1111+11190348..11192066Leucine Rich Repeat family protein, expressed
LOC_Os11g19490Os.55572.1.S1_at11/1111+11199239..11201659Protein kinase domain containing protein, expressed
LOC_Os11g19500OsAffx.7154.1.S1_at11/1111+11205699..11208063expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16631.1.S1_x_at--714--6731Chr11:11182589..11182613 (25 bp)
GTTCTTCAATGATGGCAGGTCTTTT
LOC_Os11g19460
Os.16631.1.S1_x_at--981--7251Chr11:11183156..11183180 (25 bp)
GTCCTGGACATTCTGTTCATGCACA
LOC_Os11g19460
Os.16631.1.S1_x_at--406--3271Chr11:11183940..11183964 (25 bp)
CAAACCTTCGCCTGATTTTTATCTA
LOC_Os11g19460
Os.16631.1.S1_x_at--517--10411Chr11:11183958..11183982 (25 bp)
TTATCTACATGCTGTGGACCACCTA
LOC_Os11g19460
Os.16631.1.S1_x_at--428--5851Chr11:11183974..11183998 (25 bp)
GACCACCTAAACGTTGATCCAGCAA
LOC_Os11g19460
Os.16631.1.S1_x_at--395--2511Chr11:11184114..11184138 (25 bp)
AACATTGAAGCAGCCCTTAGTGTAG
LOC_Os11g19460
Os.16631.1.S1_x_at--930--10851Chr11:11184196..11184220 (25 bp)
TTGGAGTTGAATTTGCACCTGTGCA
LOC_Os11g19460
Os.16631.1.S1_x_at--671--1011Chr11:11184245..11184269 (25 bp)
AGGTTGCACTTTGTTAACTCTTCTG
LOC_Os11g19460
Os.16631.1.S1_x_at--399--6771Chr11:11184257..11184281 (25 bp)
GTTAACTCTTCTGCTCATGTGTATA
LOC_Os11g19460
Os.16631.1.S1_x_at--167--10551Chr11:11184285..11184309 (25 bp)
TTCATATATCTGACCCTTCTGTCTT
LOC_Os11g19460
Os.16631.1.S1_x_at--473--3651Chr11:11184300..11184324 (25 bp)
CTTCTGTCTTCTGAACCTTGTCAAT
LOC_Os11g19460
Target Sequence 
GTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTTTGAAAGCATGCATGGTGAGGGCATATGAGTACATCGATGGTG
TTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCATGCATTTACAAATTATCCAGTGTGGTACCAGTTA
GTTGAGGAGAAGTTAAAGCTCTCAAAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAAGCGCAAACCTTCGCC
TGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGATGACAAACA
TTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTT
GGAGTTGAATTTGCACCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCACTTTGTTAACTCTTCTGCTCATGTG
TATAAAATTCATATATCTGACCCTTCTGTCTTCTGAACCTTGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16631.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis