Browse Element(s) Details


OsAffx.31060.1.S1_s_at

Description tigr:9639.m01815
TID=OsAffx.31060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HAD-superfamily hydrolase, subfamily IA, variant 3, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1946011/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19430NANA11+11151535..11157025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19440NANA11+11160306..11161732transposon protein, putative, unclassified
LOC_Os11g19450OsAffx.7153.1.S1_at9/1111+11170223..11174667hypothetical protein
LOC_Os11g19450Os.50.4.S1_at1/1111+11170223..11174667hypothetical protein
LOC_Os11g19450OsAffx.29729.1.S1_at1/1111+11170223..11174667hypothetical protein
LOC_Os11g19454NANA11+11177360..11179141hypothetical protein
LOC_Os11g19460Os.16631.1.S1_x_at11/1111+11180055..11185011haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g19460OsAffx.31060.1.S1_s_at11/1111+11180055..11185011haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g19470NANA11+11188542..11188862hypothetical protein
LOC_Os11g19480Os.51067.1.S1_x_at11/1111+11190348..11192066Leucine Rich Repeat family protein, expressed
LOC_Os11g19490Os.55572.1.S1_at11/1111+11199239..11201659Protein kinase domain containing protein, expressed
LOC_Os11g19500OsAffx.7154.1.S1_at11/1111+11205699..11208063expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31060.1.S1_s_at--655--8271Chr11:11184452..11184476 (25 bp)
GGCTTGGAATACATGCCAGTGCTTA
LOC_Os11g19460
OsAffx.31060.1.S1_s_at--75--2531Chr11:11184485..11184509 (25 bp)
AACTTTACCACAATCTCTGTTCAGG
LOC_Os11g19460
OsAffx.31060.1.S1_s_at--428--10031Chr11:11184566..11184590 (25 bp)
TAGACTAATCCAGACAAACTTGTGC
LOC_Os11g19460
OsAffx.31060.1.S1_s_at--102--2391Chr11:11184581..11184605 (25 bp)
AAACTTGTGCTTGGATCAGGTGTAG
LOC_Os11g19460
OsAffx.31060.1.S1_s_at--371--7751Chr11:11184599..11184623 (25 bp)
GGTGTAGCTCATGCACACGTTGTTA
LOC_Os11g19460
OsAffx.31060.1.S1_s_at--263--9011Chr11:11184610..11184634 (25 bp)
TGCACACGTTGTTAGCGCTTAAAAA
LOC_Os11g19460
OsAffx.31060.1.S1_s_at--57--4471Chr11:11184728..11184752 (25 bp)
GCCTGAGCTAGCTGGCTTGAGCCAA
LOC_Os11g19460
OsAffx.31060.1.S1_s_at--452--871Chr11:11184784..11184808 (25 bp)
AGGCTCAATCATGTGTTAACTGTTA
LOC_Os11g19460
OsAffx.31060.1.S1_s_at--750--1611Chr11:11184842..11184866 (25 bp)
AGCTGTGACTGCATTTTATTGGTTC
LOC_Os11g19460
OsAffx.31060.1.S1_s_at--1091--731Chr11:11184890..11184914 (25 bp)
ATGTTTTGTCAGAGTGATCGCCAAT
LOC_Os11g19460
OsAffx.31060.1.S1_s_at--9--6391Chr11:11184905..11184929 (25 bp)
GATCGCCAATTAATATTCAAGGTCT
LOC_Os11g19460
Target Sequence 
GGCTTGGAATACATGCCAGTGCTTAATCAATAGAACTTTACCACAATCTCTGTTCAGGATAAAAATAAATCATCTTGAAC
TAACTTTAGGTTAAATTATTTATCTATCTAATACTAGACTAATCCAGACAAACTTGTGCTTGGATCAGGTGTAGCTCATG
CACACGTTGTTAGCGCTTAAAAAATGGAAACATAGTTAGCTCTTAAAAAATCCAGAGTTAATTAAATGAGCACCAGATTC
AAGCATAGTAATTTGCTTAAAGCTAGGTAAAGAACAGCCTGAGCTAGCTGGCTTGAGCCAAAAAAGGATAGTTTTGAGGA
ACAAGAACAAACAGGCTCAATCATGTGTTAACTGTTAACTCAAAGCTTGATCAATAATCCGTCAACTCAAAGCTGTGACT
GCATTTTATTGGTTCAATAATCAAGATCCTAAGTAACTATGTTTTGTCAGAGTGATCGCCAATTAATATTCAAGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31060.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis