Browse Element(s) Details


Os.55572.1.S1_at

Description gb:AK108339.1
DB_XREF= gi:32993548
TID=Os.55572.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-A10, full insert sequence.
FL= gb:AK108339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1949011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19450OsAffx.7153.1.S1_at9/1111+11170223..11174667hypothetical protein
LOC_Os11g19450Os.50.4.S1_at1/1111+11170223..11174667hypothetical protein
LOC_Os11g19450OsAffx.29729.1.S1_at1/1111+11170223..11174667hypothetical protein
LOC_Os11g19454NANA11+11177360..11179141hypothetical protein
LOC_Os11g19460Os.16631.1.S1_x_at11/1111+11180055..11185011haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g19460OsAffx.31060.1.S1_s_at11/1111+11180055..11185011haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g19470NANA11+11188542..11188862hypothetical protein
LOC_Os11g19480Os.51067.1.S1_x_at11/1111+11190348..11192066Leucine Rich Repeat family protein, expressed
LOC_Os11g19490Os.55572.1.S1_at11/1111+11199239..11201659Protein kinase domain containing protein, expressed
LOC_Os11g19500OsAffx.7154.1.S1_at11/1111+11205699..11208063expressed protein
LOC_Os11g19510NANA11+11220875..11222955Transposable element protein, putative, Transposase_28
LOC_Os11g19520Os.1709.1.S1_x_at7/1111+11224641..11230702retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g19520OsAffx.3292.1.S1_s_at1/1111+11224641..11230702retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55572.1.S1_at--397--6691Chr11:11201326..11201350 (25 bp)
GTTCCACGTGGCTCTCGGGTGCGTG
LOC_Os11g19490
Os.55572.1.S1_at--1075--5851Chr11:11201395..11201419 (25 bp)
GAGCCTCGACAAGATTGGGTCGTGA
LOC_Os11g19490
Os.55572.1.S1_at--306--31Chr11:11201408..11201432 (25 bp)
ATTGGGTCGTGAGGAAAGTCGCTCA
LOC_Os11g19490
Os.55572.1.S1_at--107--9431Chr11:11201414..11201438 (25 bp)
TCGTGAGGAAAGTCGCTCAGAGCTG
LOC_Os11g19490
Os.55572.1.S1_at--1104--6291Chr11:11201444..11201468 (25 bp)
GATGATGTGCATGGTTGGTTTCTCT
LOC_Os11g19490
Os.55572.1.S1_at--477--9051Chr11:11201451..11201475 (25 bp)
TGCATGGTTGGTTTCTCTGTTTTTC
LOC_Os11g19490
Os.55572.1.S1_at--819--10811Chr11:11201535..11201559 (25 bp)
TTGTCTTCCTTTTGCACCATTGTAA
LOC_Os11g19490
Os.55572.1.S1_at--1123--9231Chr11:11201541..11201565 (25 bp)
TCCTTTTGCACCATTGTAATTCCTG
LOC_Os11g19490
Os.55572.1.S1_at--1013--9031Chr11:11201547..11201571 (25 bp)
TGCACCATTGTAATTCCTGATAAAA
LOC_Os11g19490
Os.55572.1.S1_at--667--9551Chr11:11201621..11201645 (25 bp)
TCTTTGTGAAATAGGAATCTGCTTG
LOC_Os11g19490
Os.55572.1.S1_at--1015--5231Chr11:11201635..11201659 (25 bp)
GAATCTGCTTGTGAAATCTACCACC
LOC_Os11g19490
Target Sequence 
GTTCCACGTGGCTCTCGGGTGCGTGGAGGCGGACCCGGAGCGGCGGCCGCGGATGAAGGCCGTCGCCGAGAGCCTCGACA
AGATTGGGTCGTGAGGAAAGTCGCTCAGAGCTGGGGGGGATGATGTGCATGGTTGGTTTCTCTGTTTTTCTTTTTTTTTT
CTTTTAATTTTAATTTTTTATGTTTTATTTTTTTGCCCTATTATTTTTTTTGTCTTCCTTTTGCACCATTGTAATTCCTG
ATAAAAATGCAATTGTTGTAGTATAATATAATATAGAATGAGAACAAGTTTATCTTCTTTGTGAAATAGGAATCTGCTTG
TGAAATCTACCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis