Browse Element(s) Details


OsAffx.29199.1.S1_at

Description tigr:9636.m01465
TID=OsAffx.29199.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1465010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14610OsAffx.16997.1.S1_at10/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14610Os.11220.1.S1_at1/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14620Os.19942.1.S1_at11/118+8789340..8791488expressed protein
LOC_Os08g14630NANA8+8794611..8795461hypothetical protein
LOC_Os08g14640Os.22829.1.S1_at11/118+8796477..8800537expressed protein
LOC_Os08g14650OsAffx.29199.1.S1_at10/118+8802883..8804027hypothetical protein
LOC_Os08g14650OsAffx.24469.1.S1_x_at1/118+8802883..8804027hypothetical protein
LOC_Os08g14660Os.53445.1.S1_at11/118+8806492..8810357SET domain containing protein, expressed
LOC_Os08g14670NANA8+8816273..8824399transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14679NANA8+8826417..8826784NA
LOC_Os08g14690Os.47463.1.S1_x_at4/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690Os.14491.2.S1_x_at4/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690OsAffx.18435.1.S1_x_at3/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690Os.36736.1.S1_x_at2/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g14690Os.36736.1.S1_at1/118+8827915..8829859transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29199.1.S1_at--99--4151NONE
CGCGGCAGAGCAGCGTATAAGTCAA
NONE
OsAffx.29199.1.S1_at--410--1511Chr08:8803873..8803897 (25 bp)
AGCAGCGTATAAGTCAAAGCTCAAA
LOC_Os08g14650
OsAffx.29199.1.S1_at--561--7091Chr08:8803885..8803909 (25 bp)
GTCAAAGCTCAAAACGGCAGATTGC
LOC_Os08g14650
OsAffx.29199.1.S1_at--270--1931Chr08:8803898..8803922 (25 bp)
ACGGCAGATTGCACACCAGTTTGGT
LOC_Os08g14650
OsAffx.29199.1.S1_at--877--5031Chr08:8803901..8803925 (25 bp)
GCAGATTGCACACCAGTTTGGTTGT
LOC_Os08g14650
OsAffx.29199.1.S1_at--327--2171Chr08:8803910..8803934 (25 bp)
ACACCAGTTTGGTTGTGAGCCGGCA
LOC_Os08g14650
OsAffx.29199.1.S1_at--771--10811Chr08:8803922..8803946 (25 bp)
TTGTGAGCCGGCAATCATGCATATA
LOC_Os08g14650
OsAffx.29199.1.S1_at--554--5871Chr08:8803926..8803950 (25 bp)
GAGCCGGCAATCATGCATATACTTA
LOC_Os08g14650
OsAffx.29199.1.S1_at--52--3951Chr08:8803930..8803954 (25 bp)
CGGCAATCATGCATATACTTAAAAT
LOC_Os08g14650
OsAffx.29199.1.S1_at--1009--2251Chr08:8803968..8803992 (25 bp)
AAATACCTGGGCTTGAAGTTTGAAG
LOC_Os08g14650
OsAffx.29199.1.S1_at--767--4271Chr08:8803973..8803997 (25 bp)
CCTGGGCTTGAAGTTTGAAGGTCAT
LOC_Os08g14650
Target Sequence 
CGCGGCAGAGCAGCGTATAAGTCAAAGCTCAAAACGGCAGATTGCACACCAGTTTGGTTGTGAGCCGGCAATCATGCATA
TACTTAAAATTAAAGATGGTAAAAAATACCTGGGCTTGAAGTTTGAAGGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis