Browse Element(s) Details


Os.22829.1.S1_at

Description gb:AK102977.1
DB_XREF= gi:32988186
TID=Os.22829.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115N03, full insert sequence.
FL= gb:AK102977.1 gb:AK101898.1 gb:AK064015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1464011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14600OsAffx.5817.1.S1_at11/118+8775521..8776513expressed protein
LOC_Os08g14610OsAffx.16997.1.S1_at10/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14610Os.11220.1.S1_at1/118+8778097..8787633Helicase conserved C-terminal domain containing protein
LOC_Os08g14620Os.19942.1.S1_at11/118+8789340..8791488expressed protein
LOC_Os08g14630NANA8+8794611..8795461hypothetical protein
LOC_Os08g14640Os.22829.1.S1_at11/118+8796477..8800537expressed protein
LOC_Os08g14650OsAffx.29199.1.S1_at10/118+8802883..8804027hypothetical protein
LOC_Os08g14650OsAffx.24469.1.S1_x_at1/118+8802883..8804027hypothetical protein
LOC_Os08g14660Os.53445.1.S1_at11/118+8806492..8810357SET domain containing protein, expressed
LOC_Os08g14670NANA8+8816273..8824399transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22829.1.S1_at--3--2571Chr08:8796843..8796867 (25 bp)
AACTGTTTGGCTGATCTGAAGGCAT
LOC_Os08g14640
Os.22829.1.S1_at--583--2711Chr08:8796796..8796820 (25 bp)
AAGCATGCGAGATTCTTTGTCCACA
LOC_Os08g14640
Os.22829.1.S1_at--667--6571Chr08:8796786..8796810 (25 bp)
GATTCTTTGTCCACAGGTGATTCTG
LOC_Os08g14640
Os.22829.1.S1_at--17--7371Chr08:8796770..8796794 (25 bp)
GTGATTCTGTAACACCTTGTTCCCC
LOC_Os08g14640
Os.22829.1.S1_at--952--10051Chr08:8796711..8796735 (25 bp)
TAGTATATCGCCCTTGCTTGTCTTA
LOC_Os08g14640
Os.22829.1.S1_at--668--4931Chr08:8796696..8796720 (25 bp)
GCTTGTCTTACCATTAGCAGTAGTA
LOC_Os08g14640
Os.22829.1.S1_at--547--10011Chr08:8796619..8796643 (25 bp)
TAGCAGTCCCAGCTTGTGTATGGCT
LOC_Os08g14640
Os.22829.1.S1_at--297--6931Chr08:8796602..8796626 (25 bp)
GTATGGCTTCTCTGCTCACTTCTAA
LOC_Os08g14640
Os.22829.1.S1_at--258--7451Chr08:8796565..8796589 (25 bp)
GTGTCAGTCCTACCTAGTTGAGGCA
LOC_Os08g14640
Os.22829.1.S1_at--911--1171Chr08:8796496..8796520 (25 bp)
AGTACATCTAGCTCGGGTATCCTAT
LOC_Os08g14640
Os.22829.1.S1_at--485--4811Chr08:8796486..8796510 (25 bp)
GCTCGGGTATCCTATCTATTAATGA
LOC_Os08g14640
Target Sequence 
AACTGTTTGGCTGATCTGAAGGCATTTCATCAGAAAAAAACATTCANAAGCATGCGAGATTCTTTGTCCACAGGTGATTC
TGTAACACCTTGTTCCCCCCTAATTCTTAAACCGTACTTGAGGATTTGTAGATAGTATATCGCCCTTGCTTGTCTTACCA
TTAGCAGTAGTATAATTAATCTGGAAACGAAGAGTTCATCTGTATAAGAACATTTCTGTATAGATAGCAGTCCCAGCTTG
TGTATGGCTTCTCTGCTCACTTCTAACACTCACCACTCGTGTCAGTCCTACCTAGTTGAGGCAGAAAAAGAACACACTTG
TAGATCAGAGATGACAATGTATCGGATAGTACATCTAGCTCGGGTATCCTATCTATTAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis