Browse Element(s) Details


OsAffx.6033.1.S1_at

Description tigr:9636.m03568
TID=OsAffx.6033.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=elicitor-inducible cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3551011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35450NANA8+22212794..22217486retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g35460NANA8+22218894..22219184hypothetical protein
LOC_Os08g35470OsAffx.17347.1.S1_at11/118+22220426..22222324Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g35480Os.12022.1.S1_at11/118+22225630..22228173Protein of unknown function containing protein, expressed
LOC_Os08g35490NANA8+22229496..22230026Ctr copper transporter family protein
LOC_Os08g35500NANA8+22232205..22232830expressed protein
LOC_Os08g35510OsAffx.6033.1.S1_at11/118+22236535..22238097Cytochrome P450 family protein
LOC_Os08g35520Os.10731.1.A1_a_at11/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.53292.1.S1_at3/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.53292.1.S1_x_at3/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520OsAffx.18229.1.S1_x_at1/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35520Os.46610.1.S1_x_at1/118+22250483..22256733retrotransposon protein, putative, unclassified
LOC_Os08g35530OsAffx.6034.1.S1_at11/118+22259709..22260897hypothetical protein
LOC_Os08g35540NANA8+22261951..22263344retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0005792cellular_componentmicrosome
GO:0004497molecular_functionmonooxygenase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6033.1.S1_at--213--6131Chr08:22237098..22237122 (25 bp)
GAGTGGGCGCTCTCGGAGCTCTTCA
LOC_Os08g35510
OsAffx.6033.1.S1_at--592--7571Chr08:22237094..22237118 (25 bp)
GGGCGCTCTCGGAGCTCTTCAAAAA
LOC_Os08g35510
OsAffx.6033.1.S1_at--96--4571Chr08:22237092..22237116 (25 bp)
GCGCTCTCGGAGCTCTTCAAAAACC
LOC_Os08g35510
OsAffx.6033.1.S1_at--114--4311Chr08:22236980..22237004 (25 bp)
CCTACCTAGACGCCATCATGAAAGA
LOC_Os08g35510
OsAffx.6033.1.S1_at--289--5571Chr08:22236961..22236985 (25 bp)
GAAAGAGACCATGCGGATGCACCCC
LOC_Os08g35510
OsAffx.6033.1.S1_at--1053--1371Chr08:22236956..22236980 (25 bp)
AGACCATGCGGATGCACCCCATCGT
LOC_Os08g35510
OsAffx.6033.1.S1_at--537--2211Chr08:22236701..22236725 (25 bp)
ACAACCTCGGGCTCAAGGTGATGCA
LOC_Os08g35510
OsAffx.6033.1.S1_at--37--7671Chr08:22236651..22236675 (25 bp)
GGGTTCGCGTGGAGGTTGCCGGAGG
LOC_Os08g35510
OsAffx.6033.1.S1_at--502--7431Chr08:22236594..22236618 (25 bp)
GTGTTTGGGCTGTCGACCACGCGCA
LOC_Os08g35510
OsAffx.6033.1.S1_at--603--8651Chr08:22236589..22236613 (25 bp)
TGGGCTGTCGACCACGCGCAAGTAC
LOC_Os08g35510
OsAffx.6033.1.S1_at--565--4111Chr08:22236573..22236597 (25 bp)
CGCAAGTACCCGCTCCAGGTGGTCG
LOC_Os08g35510
Target Sequence 
GAGTGGGCGCTCTCGGAGCTCTTCAAAAACCCCGCCATCTTCGCCACGGCCACCGACGAGCTCGACCGCGTCGTCGGCCG
CTGCCGCTGGGTCACGGAGAAGGACATCCCGAACCTCCCCTACCTAGACGCCATCATGAAAGAGACCATGCGGATGCACC
CCATCGTGCCGCTCCTCATCCCGCGCGTCGCCCGCGACGACGCCGCCGTCGCGGGCTACGACATCCCCAAGGGCGCGCGC
GTGCTCATCAACGTGTGGACCATCGGCCGGGACCCGGAGCTGTGGGACGCGGCGGAGGAGTTTATGCCGGAGAGGTTCAT
CGGGAGCAGGATCGACGTGAAGGGGCAGGACTTCGAGCTGCTGCCGTTCGGGTCCGGGCGGCGCATGTGCCCCGGCTACA
ACCTCGGGCTCAAGGTGATGCAGCTGAGCTTGGCCAACCTGCTGCACGGGTTCGCGTGGAGGTTGCCGGAGGGGATGAAG
GAGGAGGAGCTGAGCATGGACGAGGTGTTTGGGCTGTCGACCACGCGCAAGTACCCGCTCCAGGTGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis