Browse Element(s) Details


OsAffx.17347.1.S1_at

Description tigr:9636.m03564
TID=OsAffx.17347.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3547011/11Exo70 exocyst complex subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35430NANA8+22200566..22200967hypothetical protein
LOC_Os08g35440Os.6359.1.S1_at11/118+22201764..22203281Serine/threonine protein phosphatase PP1 isozyme 2, putative, expressed
LOC_Os08g35450NANA8+22212794..22217486retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g35460NANA8+22218894..22219184hypothetical protein
LOC_Os08g35470OsAffx.17347.1.S1_at11/118+22220426..22222324Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g35480Os.12022.1.S1_at11/118+22225630..22228173Protein of unknown function containing protein, expressed
LOC_Os08g35490NANA8+22229496..22230026Ctr copper transporter family protein
LOC_Os08g35500NANA8+22232205..22232830expressed protein
LOC_Os08g35510OsAffx.6033.1.S1_at11/118+22236535..22238097Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17347.1.S1_at--346--10791Chr08:22221750..22221774 (25 bp)
TTGTCCTGGAACACAACCTCGAGGG
LOC_Os08g35470
OsAffx.17347.1.S1_at--535--1071Chr08:22221771..22221795 (25 bp)
AGGGCAAGGCCTCACTCTACAGGGA
LOC_Os08g35470
OsAffx.17347.1.S1_at--20--7451Chr08:22221830..22221854 (25 bp)
GTGTACTACATCGTGCACAAGGTGA
LOC_Os08g35470
OsAffx.17347.1.S1_at--838--7831Chr08:22221911..22221935 (25 bp)
GGTAAATTCACAATGGCAGCCACGA
LOC_Os08g35470
OsAffx.17347.1.S1_at--694--1651Chr08:22221942..22221966 (25 bp)
AGCGCAGCGCATGGTTGAAGATCTT
LOC_Os08g35470
OsAffx.17347.1.S1_at--91--8331Chr08:22221987..22222011 (25 bp)
GGCTCCATGTAAGTGGTGGCTTCTC
LOC_Os08g35470
OsAffx.17347.1.S1_at--1075--7511Chr08:22222002..22222026 (25 bp)
GTGGCTTCTCGTCAGGGATATCCAA
LOC_Os08g35470
OsAffx.17347.1.S1_at--588--6491Chr08:22222018..22222042 (25 bp)
GATATCCAAGTCAGCGCTGCGGGAG
LOC_Os08g35470
OsAffx.17347.1.S1_at--1002--9131Chr08:22222035..22222059 (25 bp)
TGCGGGAGCGGTTCAGGTCCTTCAA
LOC_Os08g35470
OsAffx.17347.1.S1_at--570--3191Chr08:22222088..22222112 (25 bp)
CAATCAGGATGGTGTGTGCCGGACA
LOC_Os08g35470
OsAffx.17347.1.S1_at--1045--10671Chr08:22222175..22222199 (25 bp)
TTCCTTGGCAGGTTTCGACATCATA
LOC_Os08g35470
Target Sequence 
TTGTCCTGGAACACAACCTCGAGGGCAAGGCCTCACTCTACAGGGACACGGCTCTCTCGCATTTGTTCTTGATGAACAAT
GTGTACTACATCGTGCACAAGGTGAAGGATTCGCCGGATCTATGGAATCTGATTGGTGATGATTACTTGAAGCGGCTTAC
GGGTAAATTCACAATGGCAGCCACGAACTACCAGCGCAGCGCATGGTTGAAGATCTTGAATTGCTTGCGAGACGAGGGGC
TCCATGTAAGTGGTGGCTTCTCGTCAGGGATATCCAAGTCAGCGCTGCGGGAGCGGTTCAGGTCCTTCAATGCCGCATTC
GAGGAGGCGCATAGGGTGCAATCAGGATGGTGTGTGCCGGACACACAGCTGAGGGAGGAGCTAAGGATCTCAATTTCAGA
GAAGCTGGTGCCGGCATACCGGTCATTCCTTGGCAGGTTTCGACATCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis