Browse Element(s) Details


Os.6359.1.S1_at

Description gb:AK121378.1
DB_XREF= gi:37991001
TID=Os.6359.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127F14, full insert sequence.
FL= gb:AK121378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3544011/11Serine/threonine protein phosphatase PP1 isozyme 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35390NANA8+22176338..22182145retrotransposon protein, putative, unclassified
LOC_Os08g35400NANA8+22183460..22184119hypothetical protein
LOC_Os08g35410OsAffx.29534.1.S1_at10/118+22186936..22189115hypothetical protein
LOC_Os08g35420Os.46404.1.S1_x_at11/118+22191746..22192833Photosystem Q, putative, expressed
LOC_Os08g35430NANA8+22200566..22200967hypothetical protein
LOC_Os08g35440Os.6359.1.S1_at11/118+22201764..22203281Serine/threonine protein phosphatase PP1 isozyme 2, putative, expressed
LOC_Os08g35450NANA8+22212794..22217486retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g35460NANA8+22218894..22219184hypothetical protein
LOC_Os08g35470OsAffx.17347.1.S1_at11/118+22220426..22222324Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g35480Os.12022.1.S1_at11/118+22225630..22228173Protein of unknown function containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0000164cellular_componentprotein phosphatase type 1 complex
GO:0000163molecular_functionprotein phosphatase type 1 activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6359.1.S1_at--261--8111Chr08:22202832..22202856 (25 bp)
GGACGGCTACGAGTTCTTCGCGGAC
LOC_Os08g35440
Os.6359.1.S1_at--767--3951Chr08:22202852..22202876 (25 bp)
CGGACAGGCAGCTGGTGACCATATT
LOC_Os08g35440
Os.6359.1.S1_at--758--8611Chr08:22202864..22202888 (25 bp)
TGGTGACCATATTCTCGGCGCCGAA
LOC_Os08g35440
Os.6359.1.S1_at--1100--3231Chr08:22202964..22202988 (25 bp)
CAAGCCGTTCAGAGGCAAGTCGCAG
LOC_Os08g35440
Os.6359.1.S1_at--882--10431Chr08:22203073..22203097 (25 bp)
TTAGACAGAGGCTTCGTATACGTAG
LOC_Os08g35440
Os.6359.1.S1_at--567--6891Chr08:22203088..22203112 (25 bp)
GTATACGTAGATCTGCATGCGCATT
LOC_Os08g35440
Os.6359.1.S1_at--418--4991Chr08:22203102..22203126 (25 bp)
GCATGCGCATTTCACAGCACAGAAT
LOC_Os08g35440
Os.6359.1.S1_at--1142--2131Chr08:22203120..22203144 (25 bp)
ACAGAATTTTCTCGTTGATGCATAT
LOC_Os08g35440
Os.6359.1.S1_at--86--5611Chr08:22203152..22203176 (25 bp)
GACAAACAGATGATCCAACCTCCAC
LOC_Os08g35440
Os.6359.1.S1_at--798--2051Chr08:22203175..22203199 (25 bp)
ACTTCTTCTGAATCCTTTGCTTGTA
LOC_Os08g35440
Os.6359.1.S1_at--827--1232Chr08:22203244..22203268 (25 bp)
AGTTCCTTAATCCTATATATGCATG
LOC_Os08g35440
Target Sequence 
GGACGGCTACGAGTTCTTCGCGGACAGGCAGCTGGTGACCATATTCTCGGCGCCGAACTACTGCGGCGAGTTCNAACAAC
GCCGGCGCGCTGATGAACGTGGNCGCCAGCCTGCTCTGCTCGTTCCAGATCCTCAAGCCGTTCAGAGGCAAGTCGCAGGC
GGNGTGACGACGAAGAGACGACGCCGGCGAGGCTAGCCGGCCGTCGATCGAGGCAGAGAATTTTTCTTTTTTTTTTGGGG
ATTTAGACAGAGGCTTCGTATACGTAGATCTGCATGCGCATTTCACAGCACAGAATTTTCTCGTTGATGCATATTTGGGG
GGACAAACAGATGATCCAACCTCCACTTCTTCTGAATCCTTTGCTTGTAAACTGATTCAATACTTGTATATATAACCAAT
TAACCAAACATATAGTTCCTTAATCCTATATATGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis