Browse Element(s) Details


Os.50541.1.S1_at

Description gb:AK121710.1
DB_XREF= gi:37991333
TID=Os.50541.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076M02, full insert sequence.
FL= gb:AK121710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g117201/11expressed protein
LOC_Os08g112201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11680NANA8+6840727..6841713transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g11690NANA8+6843168..6843818transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g11700OsAffx.29149.1.S1_at10/118+6848567..6849275hypothetical protein
LOC_Os08g11720Os.18151.1.S1_at11/118+6860093..6865243expressed protein
LOC_Os08g11720Os.16492.1.S1_at10/118+6860093..6865243expressed protein
LOC_Os08g11720Os.50541.1.S1_at1/118+6860093..6865243expressed protein
LOC_Os08g11730NANA8+6874285..6874545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11740OsAffx.31869.1.S1_at8/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11740OsAffx.31869.5.S1_x_at6/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11740OsAffx.31869.4.S1_x_at2/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11740OsAffx.31869.4.S1_at1/118+6879909..6881018retrotransposon protein, putative, unclassified
LOC_Os08g11760Os.52096.1.S1_at11/118+6884757..6887329expressed protein
LOC_Os08g11760Os.46610.1.S1_x_at7/118+6884757..6887329expressed protein
LOC_Os08g11760Os.52049.1.S1_at1/118+6884757..6887329expressed protein
LOC_Os08g11760Os.53292.1.S1_at1/118+6884757..6887329expressed protein
LOC_Os08g11760Os.53292.1.S1_x_at1/118+6884757..6887329expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50541.1.S1_at--58--2551Chr04:1312908..1312932 (25 bp)
AACTCTGTTTGCAATTGTTTGGTGG
NONE
Os.50541.1.S1_at--106--7732Chr04:4495067..4495091 (25 bp)
GGTGGTTATTTATCTGGTTGTATGC
NONE
Os.50541.1.S1_at--660--8212Chr04:4495108..4495132 (25 bp)
GGAATTTTGACTTTGTATGCAGCAT
NONE
Os.50541.1.S1_at--1039--4951Chr04:1312826..1312850 (25 bp)
GCATAGCATGAATAACTTACCTGAG
NONE
Os.50541.1.S1_at--445--5571Chr04:1312759..1312783 (25 bp)
GAAAGTACATTTGTCTAGCACATGA
NONE
Os.50541.1.S1_at--267--5492Chr04:4495219..4495243 (25 bp)
GAAAATAGCCCTCAAAATTCTGGAT
NONE
Os.50541.1.S1_at--283--7991Chr04:1312674..1312698 (25 bp)
GGATGCAATACATTAGCGCTTCAAC
NONE
Os.50541.1.S1_at--798--9991Chr04:1312661..1312685 (25 bp)
TAGCGCTTCAACGATGATTCACGAA
NONE
Os.50541.1.S1_at--639--6552Chr04:4495102..4495333 (25 bp)
GATTCACGAAATTTGTCCCTTGTTG
NONE
Os.50541.1.S1_at--306--3092Chr04:4495318..4495342 (25 bp)
AATTTGTCCCTTGTTGTTTCTTGTG
NONE
Os.50541.1.S1_at--904--3614Chr08:6593619..6594008 (25 bp)
CTTGTGTTTTGATTTGCAACCATTA
LOC_Os08g11220
Target Sequence 
AACTCTGTTTGCAATTGTTTGGTGGTTATTTATCTGGTTGTATGCAATGGGAAATGATGCAGGAATTTTGACTTTGTATG
CAGCATAGCATGAATAACTTACCTGAGTAGTACTGTAGAATTCTGGTAACATAATATAGTATGCATGTAGAAAGTACATT
TGTCTAGCACATGAAAATAGCCCTCAAAATTCTGGATGCATAATTCTTGTATAGAATCCTGGAAGCATAATTGTGGATGC
AATACATTAGCGCTTCAACGATGATTCACGAAATTTGTCCCTTGTTGTTTCTTGTGTTTTGATTTGCAACCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis