Browse Element(s) Details


OsAffx.16948.1.S1_at

Description tigr:9636.m01095
TID=OsAffx.16948.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1119011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11140OsAffx.29146.5.S1_at11/118+6542239..6542718hypothetical protein
LOC_Os08g11140OsAffx.29146.5.S1_x_at11/118+6542239..6542718hypothetical protein
LOC_Os08g11140OsAffx.29146.4.S1_s_at11/118+6542239..6542718hypothetical protein
LOC_Os08g11150OsAffx.17598.1.S1_at2/118+6544181..6553935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11150OsAffx.21249.1.S1_at1/118+6544181..6553935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11160Os.10731.1.A1_a_at11/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11160Os.38764.1.S1_x_at8/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11160Os.48015.1.A1_x_at3/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11160Os.45173.1.S1_x_at2/118+6556616..6557548retrotransposon protein, putative, unclassified
LOC_Os08g11170OsAffx.18229.1.S1_x_at1/118+6558535..6560215hypothetical protein
LOC_Os08g11180OsAffx.10632.1.S1_at1/118+6561142..6566902retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11190OsAffx.16948.1.S1_at11/118+6567533..6570299hypothetical protein
LOC_Os08g11190Os.23638.1.A1_at4/118+6567533..6570299hypothetical protein
LOC_Os08g11190Os.23638.1.A1_x_at4/118+6567533..6570299hypothetical protein
LOC_Os08g11200Os.52096.1.S1_at9/118+6570897..6579387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11200OsAffx.16946.1.S1_at2/118+6570897..6579387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11200Os.5263.1.S1_x_at1/118+6570897..6579387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11210Os.10731.1.A1_a_at11/118+6580623..6581487retrotransposon protein, putative, unclassified
LOC_Os08g11210Os.38764.1.S1_x_at7/118+6580623..6581487retrotransposon protein, putative, unclassified
LOC_Os08g11220Os.16492.1.S1_at10/118+6591927..6597034expressed protein
LOC_Os08g11220Os.18151.1.S1_at9/118+6591927..6597034expressed protein
LOC_Os08g11220Os.50541.1.S1_at1/118+6591927..6597034expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16948.1.S1_at--1009--1111Chr08:6569371..6569395 (25 bp)
AGTGCACAGGATGTTTCGCCCGTTC
LOC_Os08g11190
OsAffx.16948.1.S1_at--764--3291Chr08:6569375..6569399 (25 bp)
CACAGGATGTTTCGCCCGTTCTGCG
LOC_Os08g11190
OsAffx.16948.1.S1_at--520--4791Chr08:6569435..6569459 (25 bp)
GCTCCATAGCTAAGGCGCGCCTGCT
LOC_Os08g11190
OsAffx.16948.1.S1_at--527--5071Chr08:6569867..6569891 (25 bp)
TCACCAAAAATTGTGTATTCGGGCC
LOC_Os08g11190
OsAffx.16948.1.S1_at--118--8111Chr08:6569888..6569912 (25 bp)
GGCCCCCTTTGGCAATTGGCAAAGT
LOC_Os08g11190
OsAffx.16948.1.S1_at--1159--8951Chr08:6569953..6569977 (25 bp)
TGCGGTGTCCGTTTCGGCCAGTTTA
LOC_Os08g11190
OsAffx.16948.1.S1_at--698--4411Chr08:6569969..6569993 (25 bp)
GCCAGTTTACCACGAGATGATAATC
LOC_Os08g11190
OsAffx.16948.1.S1_at--868--8551Chr08:6570058..6570082 (25 bp)
TGGAGGACTACGATAGCGTCCATAC
LOC_Os08g11190
OsAffx.16948.1.S1_at--951--6451Chr08:6570069..6570093 (25 bp)
GATAGCGTCCATACCAAACGCCGTG
LOC_Os08g11190
OsAffx.16948.1.S1_at--365--7271Chr08:6570075..6570099 (25 bp)
GTCCATACCAAACGCCGTGAGGATA
LOC_Os08g11190
OsAffx.16948.1.S1_at--21--9991Chr08:6570080..6570103 (24 bp)
TACCAAACGCCGTGAGGATATGGTG
LOC_Os08g11190
Target Sequence 
AGTGCACAGGATGTTTCGCCCGTTCTGCGAGCTTGGCATAAGCTGTTCTGGCAGAAGGACGGCCGCTCCATAGCTAAGGC
GCGCCTGCTCGAGCAACTGGCGAAGGCGGAGGCAGCAGATCAGGGCGAAGAGCCGGCAGCCGGTGAGGGAGGAGGCGATG
CCGAAGATCACCCAGAGGGTGTTCACCAAAAATTGTGTATTCGGGCCCCCTTTGGCAATTGGCAAAGTAAAAACGAAAAG
TTCGTAGCGGTGAAGGGTTTGCCGAAGGTGCGGTGTCCGTTTCGGCCAGTTTACCACGAGATGATAATCAACGGCAACAG
CTACAAGGTTTTGAAAGTTGCCGGCTGGATGCGGGTGCACCCCGGGCGAACCCTGGAGGACTACGATAGCGTCCATACCA
AACGCCGTGAGGATATGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis