Browse Element(s) Details


Os.51972.1.S1_at

Description gb:AK064437.1
DB_XREF= gi:32974455
TID=Os.51972.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51972 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-D10, full insert sequence.
FL= gb:AK064437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1700011/11BURP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16970OsAffx.4855.1.S1_at11/116+9836651..9837052hypothetical protein
LOC_Os06g16980Os.20056.1.A1_at11/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16980OsAffx.24454.2.S1_x_at2/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16980Os.7779.1.S2_x_at2/116+9839889..9855981DNA topoisomerase I family protein, expressed
LOC_Os06g16990OsAffx.15465.1.S1_at11/116+9856524..9857170hypothetical protein
LOC_Os06g17000Os.51972.1.S1_at11/116+9860879..9862939BURP domain containing protein, expressed
LOC_Os06g17000OsAffx.4876.1.S1_x_at1/116+9860879..9862939BURP domain containing protein, expressed
LOC_Os06g17020OsAffx.15467.1.S1_at3/116+9869712..9871353UDP-glycosyltransferase 89B2, putative, expressed
LOC_Os06g17030OsAffx.27348.1.S1_x_at1/116+9875078..9878342transposon protein, putative, unclassified, expressed
LOC_Os06g17040NANA6+9878981..9885328retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004650molecular_functionpolygalacturonase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51972.1.S1_at--781--7371Chr06:9861427..9861451 (25 bp)
GTGACGTGCCACACCATGAGGTTCC
LOC_Os06g17000
Os.51972.1.S1_at--506--8891Chr06:9861411..9861435 (25 bp)
TGAGGTTCCCATTCGCTGTGTTCTA
LOC_Os06g17000
Os.51972.1.S1_at--1116--2591Chr06:9861373..9861397 (25 bp)
AACCCTACCCGAGTGTACGCAGTGG
LOC_Os06g17000
Os.51972.1.S1_at--541--5631Chr06:9861268..9861292 (25 bp)
GACACGTCACGATTTGACCCCAAGA
LOC_Os06g17000
Os.51972.1.S1_at--117--2771Chr06:9861247..9861271 (25 bp)
AAGACTCCATTGTTCGTCGAGCACA
LOC_Os06g17000
Os.51972.1.S1_at--164--7471Chr06:9861199..9861223 (25 bp)
GTGTGCCACTTCGTTAGCAGGGACA
LOC_Os06g17000
Os.51972.1.S1_at--526--8651Chr06:9861166..9861190 (25 bp)
TGGGCACCTGTAGCTGCTGTGATAA
LOC_Os06g17000
Os.51972.1.S1_at--1082--2071Chr06:9861051..9861075 (25 bp)
ACATATGTACGTACCGGTGCTTGCG
LOC_Os06g17000
Os.51972.1.S1_at--15--6951Chr06:9861027..9861051 (25 bp)
GTAGTACTATGCATGCCTTCCACTG
LOC_Os06g17000
Os.51972.1.S1_at--1063--9091Chr06:9861004..9861028 (25 bp)
TGCTCTGTTCATAGTTCTGTTCTGC
LOC_Os06g17000
Os.51972.1.S1_at--1037--8791Chr06:9860987..9861011 (25 bp)
TGTTCTGCCTTGTACTTGCTCTATA
LOC_Os06g17000
Target Sequence 
GTGACGTGCCACACCATGAGGTTCCCATTCGCTGTGTTCTACTGCCACGCGATCAACCCTACCCGAGTGTACGCAGTGGT
GCTGGAGAGCGAGGAGGATGGCAGCGGCAGCGGCAGCGGCACACCGGAGAAGATGGAGGCGCTCGCCGTGTGCCACCTGG
ACACGTCACGATTTGACCCCAAGACTCCATTGTTCGTCGAGCACAATCTCAGGCCGGGAGATGCGTCGGTGTGCCACTTC
GTTAGCAGGGACAGCGTGAACTGGGCACCTGTAGCTGCTGTGATAACACATGGAGATGAACAAGTCTCAATTGCCGAGTA
GAGGCGAAGCACCAAGCATGCACTCATCACAAGTGTTTGTATTAAATAAAGCTGGTACATATGTACGTACCGGTGCTTGC
GTAGTACTATGCATGCCTTCCACTGCTCTGTTCATAGTTCTGTTCTGCCTTGTACTTGCTCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis