Browse Element(s) Details


Os.53280.1.S1_at

Description gb:AK071774.1
DB_XREF= gi:32981797
TID=Os.53280.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53280 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023109C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109C12, full insert sequence.
FL= gb:AK071774.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2027011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20200Os.31312.5.S1_x_at1/117+11655678..11658978retrotransposon protein, putative, unclassified
LOC_Os07g20210NANA7+11659606..11663784retrotransposon protein, putative, unclassified
LOC_Os07g20220NANA7+11664689..11665069hypothetical protein
LOC_Os07g20230NANA7+11667662..11668678retrotransposon protein, putative, unclassified
LOC_Os07g20240Os.38395.3.S1_x_at11/117+11669152..11672040transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g20240Os.38395.2.S1_x_at9/117+11669152..11672040transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g20240Os.38395.4.S1_x_at2/117+11669152..11672040transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g20240Os.38395.1.S1_at1/117+11669152..11672040transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g20250NANA7+11672636..11674180retrotransposon protein, putative, unclassified
LOC_Os07g20260Os.54774.1.S1_at2/117+11677029..11678388hypothetical protein
LOC_Os07g20260Os.54774.1.S1_x_at2/117+11677029..11678388hypothetical protein
LOC_Os07g20270Os.53280.1.S1_at11/117+11683053..11685569expressed protein
LOC_Os07g20280Os.36476.1.S1_at3/117+11688435..11695221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g20280OsAffx.11386.1.S1_x_at1/117+11688435..11695221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g20280OsAffx.4856.1.S1_x_at1/117+11688435..11695221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g20280OsAffx.26607.2.S1_at1/117+11688435..11695221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g20290NANA7+11703061..11703297hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53280.1.S1_at--219--7731Chr07:11684007..11684031 (25 bp)
GGTGGCCACACCAGAGAAGCCTAGT
LOC_Os07g20270
Os.53280.1.S1_at--674--791Chr07:11683963..11683987 (25 bp)
ATGGGCGTGGACTCACAGACCGGAA
LOC_Os07g20270
Os.53280.1.S1_at--413--8111Chr07:11683935..11683959 (25 bp)
GGACGACAATACAGACTATACCCAT
LOC_Os07g20270
Os.53280.1.S1_at--345--4811Chr07:11683909..11683933 (25 bp)
GCTCGTCACACCGATCTGATGGAAG
LOC_Os07g20270
Os.53280.1.S1_at--933--7651Chr07:11683434..11683458 (25 bp)
GGGTCCTTGAAAGATAGCCATCCGG
LOC_Os07g20270
Os.53280.1.S1_at--564--1691Chr07:11683419..11683443 (25 bp)
AGCCATCCGGAGTTAGCTCGGCAAA
LOC_Os07g20270
Os.53280.1.S1_at--709--5531Chr07:11683341..11683365 (25 bp)
GAAACACCATTTCCAGCAGTTGTAA
LOC_Os07g20270
Os.53280.1.S1_at--871--2431Chr07:11683240..11683264 (25 bp)
AAAATGGTTTCCTTGCTGTTCATGC
LOC_Os07g20270
Os.53280.1.S1_at--610--611Chr07:11683219..11683243 (25 bp)
ATGCTGCCCTTTCTGTTGCTAACAG
LOC_Os07g20270
Os.53280.1.S1_at--647--9611Chr07:11683174..11683198 (25 bp)
TCATCCATGTCCATTTGCCTATTGA
LOC_Os07g20270
Os.53280.1.S1_at--554--2351Chr07:11683134..11683158 (25 bp)
AAAGCTTTGAGCATTCGACACATTC
LOC_Os07g20270
Target Sequence 
GGTGGCCACACCAGAGAAGCCTAGTACTTCCAAGGAGAAGGGGGATGGGCGTGGACTCACAGACCGGAATGGGGACGACA
ATACAGACTATACCCATAGCTCGTCACACCGATCTGATGGAAGCACAACAAGTTTTGCATTTCCAATATTGACAGGGTCA
GCGAAAACAAGTGGGTCCTTGAAAGATAGCCATCCGGAGTTAGCTCGGCAAACCACGGCGCAGCTGACGCATCCCAGCGA
GATGCGTGATGAGAATGAGAATAAGGAAACACCATTTCCAGCAGTTGTAATGGAGGCACCAAAAGTCGAAGCAACCCCAG
CAGCAGCAGCAACAGCACCTGCACCACCAGCACCACCGGCCACAACAAAATGGTTTCCTTGCTGTTCATGCTGCCCTTTC
TGTTGCTAACAGCAAAGGGATATGCAACTTCATCATCCATGTCCATTTGCCTATTGAATCCTTAACTAGTGGAAAGCTTT
GAGCATTCGACACATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis