Browse Element(s) Details


OsAffx.13387.2.S1_at

Description tigr:9631.m04145
TID=OsAffx.13387.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4306011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43010Os.49538.1.S1_at10/113+23943442..23951796H1flk, putative, expressed
LOC_Os03g43020Os.18497.1.S1_at11/113+23953206..23957468prefoldin subunit 4, putative, expressed
LOC_Os03g43030NANA3+23963520..23964414hypothetical protein
LOC_Os03g43040NANA3+23964668..23968115retrotransposon protein, putative, unclassified
LOC_Os03g43050OsAffx.13315.1.S1_at11/113+23969083..23970205hypothetical protein
LOC_Os03g43060OsAffx.13387.2.S1_at11/113+23972905..23977702F-box domain containing protein
LOC_Os03g43060OsAffx.13387.3.S1_x_at1/113+23972905..23977702F-box domain containing protein
LOC_Os03g43070OsAffx.25507.1.S1_at11/113+23982556..23985394hypothetical protein
LOC_Os03g43080OsAffx.13317.1.S1_at11/113+23989932..23990602hypothetical protein
LOC_Os03g43090Os.14491.2.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43090Os.47463.1.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43100Os.10266.1.S1_at11/113+24000382..24001487expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13387.2.S1_at--1053--9531Chr03:23973463..23973487 (25 bp)
TCTTTCCACTACTGGAACCCATAGT
LOC_Os03g43060
OsAffx.13387.2.S1_at--280--7051Chr03:23973440..23973464 (25 bp)
GTAAAGCTAGAAAGGCAGGCAGATC
LOC_Os03g43060
OsAffx.13387.2.S1_at--575--8271Chr03:23973427..23973451 (25 bp)
GGCAGGCAGATCACATATCCAAGAT
LOC_Os03g43060
OsAffx.13387.2.S1_at--1092--2791Chr03:23973402..23973426 (25 bp)
AAGATGATACCATGCATCCCACCTT
LOC_Os03g43060
OsAffx.13387.2.S1_at--572--4971Chr03:23973389..23973413 (25 bp)
GCATCCCACCTTCCATTTCTTTGGG
LOC_Os03g43060
OsAffx.13387.2.S1_at--935--972Chr12:17663079..17663098 (20 bp)
AGGAGAGGCAGCTGGTTCTCGACAA
NONE
OsAffx.13387.2.S1_at--40--1631Chr03:23973314..23973338 (25 bp)
AGCTGGTTCTCGACAAGGAGCATGT
LOC_Os03g43060
OsAffx.13387.2.S1_at--564--771Chr03:23973293..23973317 (25 bp)
ATGTCGCGGTGGACATACGGCACCA
LOC_Os03g43060
OsAffx.13387.2.S1_at--1153--3271Chr03:23973248..23973272 (25 bp)
CAAACACCGGGTCGTTGTGCATGTA
LOC_Os03g43060
OsAffx.13387.2.S1_at--1008--7691Chr03:23973240..23973264 (25 bp)
GGGTCGTTGTGCATGTATCCACCGC
LOC_Os03g43060
OsAffx.13387.2.S1_at--29--4251Chr03:23973171..23973195 (25 bp)
CCGTCGGTGAACATCACCTGCAAGA
LOC_Os03g43060
Target Sequence 
TCTTTCCACTACTGGAACCCATAGTAAAGCTAGAAAGGCAGGCAGATCACATATCCAAGATAAGATGATACCATGCATCC
CACCTTCCATTTCTTTGGGATTCTTTGCCGGTCTCGACGGCGACGAGCTTCTGGAGGAGGAGGAGAGGCAGCTGGTTCTC
GACAAGGAGCATGTCGCGGTGGACATACGGCACCATGTACAGCGTGCCGTGGGGCCAAACACCGGGTCGTTGTGCATGTA
TCCACCGCCGCCGATCACCTTCGCCATCCTCATCATCTTCAGCAGGAAGCACCCGTCGGTGAACATCACCTGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13387.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis