Browse Element(s) Details


OsAffx.25507.1.S1_at

Description tigr:9631.m04146
TID=OsAffx.25507.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4307011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43030NANA3+23963520..23964414hypothetical protein
LOC_Os03g43040NANA3+23964668..23968115retrotransposon protein, putative, unclassified
LOC_Os03g43050OsAffx.13315.1.S1_at11/113+23969083..23970205hypothetical protein
LOC_Os03g43060OsAffx.13387.2.S1_at11/113+23972905..23977702F-box domain containing protein
LOC_Os03g43060OsAffx.13387.3.S1_x_at1/113+23972905..23977702F-box domain containing protein
LOC_Os03g43070OsAffx.25507.1.S1_at11/113+23982556..23985394hypothetical protein
LOC_Os03g43080OsAffx.13317.1.S1_at11/113+23989932..23990602hypothetical protein
LOC_Os03g43090Os.14491.2.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43090Os.47463.1.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43100Os.10266.1.S1_at11/113+24000382..24001487expressed protein
LOC_Os03g43114OsAffx.25508.1.S1_s_at11/113+24003465..24008078expressed protein
LOC_Os03g43114Os.50212.1.S1_at11/113+24003465..24008078expressed protein
LOC_Os03g43114OsAffx.25508.1.S1_at1/113+24003465..24008078expressed protein
LOC_Os03g43130Os.34588.2.S1_at1/113+24009763..24012841transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25507.1.S1_at--1161--10571Chr03:23984751..23984775 (25 bp)
TTCTCCAACTTCTCATCATCATGAA
LOC_Os03g43070
OsAffx.25507.1.S1_at--390--4731Chr03:23984797..23984821 (25 bp)
GCTGTGGGTAGCCATCACATTGAAG
LOC_Os03g43070
OsAffx.25507.1.S1_at--656--6931Chr03:23984827..23984851 (25 bp)
GTAGAACCAACTCCTACTATCCCTG
LOC_Os03g43070
OsAffx.25507.1.S1_at--615--8991Chr03:23984977..23985001 (25 bp)
TGAAGAAGAAACCACTAGCCTGCCT
LOC_Os03g43070
OsAffx.25507.1.S1_at--272--9551Chr03:23985037..23985061 (25 bp)
TCTATATATTGCACATCGGCTAGGG
LOC_Os03g43070
OsAffx.25507.1.S1_at--192--9451Chr03:23985052..23985076 (25 bp)
TCGGCTAGGGAGTTCTCTGGATTCT
LOC_Os03g43070
OsAffx.25507.1.S1_at--51--10591Chr03:23985064..23985088 (25 bp)
TTCTCTGGATTCTCTGGTTGTTGAT
LOC_Os03g43070
OsAffx.25507.1.S1_at--969--9711Chr03:23985142..23985166 (25 bp)
TCAAGCCGAAATCATCTCTCTTGCT
LOC_Os03g43070
OsAffx.25507.1.S1_at--39--471Chr03:23985155..23985179 (25 bp)
ATCTCTCTTGCTGTGTATCTTGAGC
LOC_Os03g43070
OsAffx.25507.1.S1_at--434--4931Chr03:23985295..23985319 (25 bp)
GCTTGATGAAATGACCACCGACTCT
LOC_Os03g43070
OsAffx.25507.1.S1_at--778--8891Chr03:23985306..23985330 (25 bp)
TGACCACCGACTCTGTCCAAATCAA
LOC_Os03g43070
Target Sequence 
TTCTCCAACTTCTCATCATCATGAATCAAGCGAACATACTCCATCGGCTGTGGGTAGCCATCACATTGAAGAAGAAGTAG
AACCAACTCCTACTATCCCTGCTTTAGCTGATATGTTCTCCTTTGACATAAAGCAATTCTTTGATGATGAAGAAGAAACC
ACTAGCCTGCCTTTAGCTCTTCTTACCGATGATGCCAAAGCAACACTTCTATATATTGCACATCGGCTAGGGAGTTCTCT
GGATTCTCTGGTTGTTGATTGTGGACCTATAAGAGCAAGGTTTGAAGAAATCCATGATCAGATTCCTAAGGATCAAGCCG
AAATCATCTCTCTTGCTGTGTATCTTGAGCAACATCGGTTCAAGTTAGAGAAAACAAGACAAAGGATTGCCGATAGGAGT
GAAAGAAAAGAACTTGAAGCCACAATTCAAGCTAATCGGCAAACTATCAATGAAGACAAATCCAAGCTTGATGAAATGAC
CACCGACTCTGTCCAAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis