Browse Element(s) Details


Os.10266.1.S1_at

Description gb:AK071513.1
DB_XREF= gi:32981536
TID=Os.10266.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099E07, full insert sequence.
FL= gb:AK071513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4310011/11expressed protein
LOC_Os04g054601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43060OsAffx.13387.2.S1_at11/113+23972905..23977702F-box domain containing protein
LOC_Os03g43060OsAffx.13387.3.S1_x_at1/113+23972905..23977702F-box domain containing protein
LOC_Os03g43070OsAffx.25507.1.S1_at11/113+23982556..23985394hypothetical protein
LOC_Os03g43080OsAffx.13317.1.S1_at11/113+23989932..23990602hypothetical protein
LOC_Os03g43090Os.14491.2.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43090Os.47463.1.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43100Os.10266.1.S1_at11/113+24000382..24001487expressed protein
LOC_Os03g43114OsAffx.25508.1.S1_s_at11/113+24003465..24008078expressed protein
LOC_Os03g43114Os.50212.1.S1_at11/113+24003465..24008078expressed protein
LOC_Os03g43114OsAffx.25508.1.S1_at1/113+24003465..24008078expressed protein
LOC_Os03g43130Os.34588.2.S1_at1/113+24009763..24012841transposon protein, putative, unclassified
LOC_Os03g43140OsAffx.25509.1.S1_at11/113+24014481..24015525hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10266.1.S1_at--275--3491Chr03:24000962..24000986 (25 bp)
CATCCCCGTAAGTCGATCCAAGAAG
LOC_Os03g43100
Os.10266.1.S1_at--947--5611Chr03:24000986..24001010 (25 bp)
GACAACAGTCTGTTTGCCACCAATC
LOC_Os03g43100
Os.10266.1.S1_at--1028--10671Chr03:24000999..24001023 (25 bp)
TTGCCACCAATCGAGTTATTCAGTT
LOC_Os03g43100
Os.10266.1.S1_at--682--3637Chr03:24001074..24001098 (25 bp)
CTTGCTCCATGCAGGGTTTGTTGTT
LOC_Os03g43100
Os.10266.1.S1_at--352--4731Chr03:24001152..24001176 (25 bp)
GCTGAGTCCGGTTATGCTTAATCCA
LOC_Os03g43100
Os.10266.1.S1_at--1088--1511Chr03:24001193..24001217 (25 bp)
AGCAGACCTCCGTTTTTGTGCAGTC
LOC_Os03g43100
Os.10266.1.S1_at--896--71Chr03:24001241..24001265 (25 bp)
ATTGCCGGTTTGTCGAGCGTGCTGC
LOC_Os03g43100
Os.10266.1.S1_at--158--6611Chr03:24001358..24001382 (25 bp)
GATTGTAGCCCTAGTGCAGTTTTCC
LOC_Os03g43100
Os.10266.1.S1_at--1056--5531Chr03:24001391..24001415 (25 bp)
GAAACAGATGGTTTTATGCTCTCTT
LOC_Os03g43100
Os.10266.1.S1_at--751--10432Chr03:24001404..24001428 (25 bp)
TTATGCTCTCTTTATCTGTTTGGCA
LOC_Os03g43100
Os.10266.1.S1_at--1036--51Chr03:24001443..24001467 (25 bp)
ATTCCAGTGAACTCTGTCGTTTTAT
LOC_Os03g43100
Target Sequence 
CATCCCCGTAAGTCGATCCAAGAAGACAACAGTCTGTTTGCCACCAATCGAGTTATTCAGTTGGTTTGGGGATTTAGATG
TGGGCTCCTTCTTTCTATGTGTTNCCTACCAGCTTGCTCCATGCAGGGTTTGTTGTTCGGGTTGAGCTCACGCTCCTCAG
ATTTAATGACGAACTCTGTGGACATCTCTTGCTGAGTCCGGTTATGCTTAATCCAAAATCTATGGCTCAACAGCAGACCT
CCGTTTTTGTGCAGTCTTCGTAGAGGCAACCGGATGGGGATTGCCGGTTTGTCGAGCGTGCTGCACGCCGAAGGAGGCCC
AAGGTTGCATTNGTCACGGCATTATCGCAGCTCCCTGTCGATGTGCAACTTNTCTGTTGTGTGGTTTCAATATGAAGATT
GTAGCCCTAGTGCAGTTTTCCGTTCATTGGAAACAGATGGTTTTATGCTCTCTTTATCTGTTTGGCANTGTACTGGGATT
TATTCCAGTGAACTCTGTCGTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis