Browse Element(s) Details


OsAffx.25508.1.S1_s_at

Description tigr:9631.m04151
TID=OsAffx.25508.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4311411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43070OsAffx.25507.1.S1_at11/113+23982556..23985394hypothetical protein
LOC_Os03g43080OsAffx.13317.1.S1_at11/113+23989932..23990602hypothetical protein
LOC_Os03g43090Os.14491.2.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43090Os.47463.1.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43100Os.10266.1.S1_at11/113+24000382..24001487expressed protein
LOC_Os03g43114OsAffx.25508.1.S1_s_at11/113+24003465..24008078expressed protein
LOC_Os03g43114Os.50212.1.S1_at11/113+24003465..24008078expressed protein
LOC_Os03g43114OsAffx.25508.1.S1_at1/113+24003465..24008078expressed protein
LOC_Os03g43130Os.34588.2.S1_at1/113+24009763..24012841transposon protein, putative, unclassified
LOC_Os03g43140OsAffx.25509.1.S1_at11/113+24014481..24015525hypothetical protein
LOC_Os03g43150OsAffx.3496.1.S1_x_at11/113+24030486..24030842retrotransposon protein, putative, unclassified
LOC_Os03g43150OsAffx.21269.1.S1_x_at1/113+24030486..24030842retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25508.1.S1_s_at--285--8391Chr03:24007995..24008019 (25 bp)
GGCGACGGACTCTATCGATGGCGAC
LOC_Os03g43114
OsAffx.25508.1.S1_s_at--311--5751Chr03:24007992..24008016 (25 bp)
GACGGACTCTATCGATGGCGACAAC
LOC_Os03g43114
OsAffx.25508.1.S1_s_at--192--7791Chr03:24007928..24007952 (25 bp)
GGTCGCGGACGAGCGTGGCGTCAGC
LOC_Os03g43114
OsAffx.25508.1.S1_s_at--389--5071Chr03:24007769..24007793 (25 bp)
GCACGCGGAAGGTTCCCCTTCAGAT
LOC_Os03g43114
OsAffx.25508.1.S1_s_at--1075--8191Chr03:24007763..24007787 (25 bp)
GGAAGGTTCCCCTTCAGATTCCATC
LOC_Os03g43114
OsAffx.25508.1.S1_s_at--1043--3451Chr03:24007437..24007461 (25 bp)
CAGTGTTACTTACAGATCTATCAGG
LOC_Os03g43114
OsAffx.25508.1.S1_s_at--753--6771Chr03:24007433..24007457 (25 bp)
GTTACTTACAGATCTATCAGGCTTT
LOC_Os03g43114
OsAffx.25508.1.S1_s_at--894--9851Chr03:24007427..24007451 (25 bp)
TACAGATCTATCAGGCTTTCAGGAA
LOC_Os03g43114
OsAffx.25508.1.S1_s_at--100--6431Chr03:24007423..24007447 (25 bp)
GATCTATCAGGCTTTCAGGAAACAT
LOC_Os03g43114
OsAffx.25508.1.S1_s_at--611--3691Chr03:24007420..24007444 (25 bp)
CTATCAGGCTTTCAGGAAACATATA
LOC_Os03g43114
OsAffx.25508.1.S1_s_at--1095--3571Chr03:24007401..24007425 (25 bp)
CATATATGCTCTTTATCCCACTAAG
LOC_Os03g43114
Target Sequence 
GGCGACGGACTCTATCGATGGCGACAACGACGCGGCGGCGGTCGCGGACGAGCGCGGCGTCGGCGGCGGTCGCGGACGAG
CGTGGCGTCAGCGGCGACGGTCGCGGACGAGCGCGGCGGCGACGGCGGCGGATGCGGACGAGCGCGGCGACGGCGGCGGC
GGCGGCAGCGGACGCGGATGAGGGCGGCGGTGGCGGAGGTCGCGGTCGAGGGCGGCGGCGGACCACGCACGCGGAAGGTT
CCCCTTCAGATTCCATCATTGAAGAAGCAGTGTTACTTACAGATCTATCAGGCTTTCAGGAAACATATATGCTCTTTATC
CCACTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25508.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis