Browse Element(s) Details


Os.50212.1.S1_at

Description gb:AK120126.1
DB_XREF= gi:37989749
TID=Os.50212.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026E13, full insert sequence.
FL= gb:AK120126.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4311411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43070OsAffx.25507.1.S1_at11/113+23982556..23985394hypothetical protein
LOC_Os03g43080OsAffx.13317.1.S1_at11/113+23989932..23990602hypothetical protein
LOC_Os03g43090Os.14491.2.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43090Os.47463.1.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43100Os.10266.1.S1_at11/113+24000382..24001487expressed protein
LOC_Os03g43114OsAffx.25508.1.S1_s_at11/113+24003465..24008078expressed protein
LOC_Os03g43114Os.50212.1.S1_at11/113+24003465..24008078expressed protein
LOC_Os03g43114OsAffx.25508.1.S1_at1/113+24003465..24008078expressed protein
LOC_Os03g43130Os.34588.2.S1_at1/113+24009763..24012841transposon protein, putative, unclassified
LOC_Os03g43140OsAffx.25509.1.S1_at11/113+24014481..24015525hypothetical protein
LOC_Os03g43150OsAffx.3496.1.S1_x_at11/113+24030486..24030842retrotransposon protein, putative, unclassified
LOC_Os03g43150OsAffx.21269.1.S1_x_at1/113+24030486..24030842retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50212.1.S1_at--1035--9771Chr03:24004261..24004285 (25 bp)
TAACTTGAATGGTGGTAACCTTCTG
LOC_Os03g43114
Os.50212.1.S1_at--1123--7052Chr08:2120682..2120706 (25 bp)
GTAACCTTCTGTTTCAGCTTGTCAA
NONE
Os.50212.1.S1_at--443--731Chr03:24004130..24004154 (25 bp)
ATGTTGTATTTCTTCTTTCATAATT
LOC_Os03g43114
Os.50212.1.S1_at--232--10491Chr03:24004077..24004101 (25 bp)
TTACATGGTATGGATGTCCTTCTTT
LOC_Os03g43114
Os.50212.1.S1_at--1--7991Chr03:24004066..24004090 (25 bp)
GGATGTCCTTCTTTAGTATATTTAC
LOC_Os03g43114
Os.50212.1.S1_at--156--4931Chr03:24003986..24004010 (25 bp)
GCTTGCATTATTCAACGAGTTCAAT
LOC_Os03g43114
Os.50212.1.S1_at--264--2531Chr03:24003916..24003940 (25 bp)
AACTATCTCTGGATGGTGCTTCATG
LOC_Os03g43114
Os.50212.1.S1_at--1078--8551Chr03:24003907..24003931 (25 bp)
TGGATGGTGCTTCATGCCTCCATGT
LOC_Os03g43114
Os.50212.1.S1_at--932--591Chr03:24003894..24003918 (25 bp)
ATGCCTCCATGTGATGTTCATGTCA
LOC_Os03g43114
Os.50212.1.S1_at--317--6731Chr03:24003879..24003903 (25 bp)
GTTCATGTCATATTGCAGGTACTCA
LOC_Os03g43114
Os.50212.1.S1_at--1068--3271Chr03:24003726..24003750 (25 bp)
CACCAATATTTCAGGTTCGTTTCCT
LOC_Os03g43114
Target Sequence 
TAACTTGAATGGTGGTAACCTTCTGTTTCAGCTTGTCAATTTGATGCGTGATTGGGTTTTCAGGGTCAGAGCAACAAGCG
TGAATGCGTGATTGAGCGGATACACTACTGAGGTTCTTGAGAGTAAATATAATGTTGTATTTCTTCTTTCATAATTAACA
TTTTCACTAATATATTTCAGCAATTTACATGGTATGGATGTCCTTCTTTAGTATATTTACTTTTGTTAACTATATAAAAT
TACATATATGCCAAGTTGTTATATATTTTCAGAAAGCTTGCATTATTCAACGAGTTCAATGATAGGAGGCTAGATATATA
GATTAAATTGAATGGAATTATATTTAACTATCTCTGGATGGTGCTTCATGCCTCCATGTGATGTTCATGTCATATTGCAG
GTACTCATCATTGAGTTTCTTGGCAAGATCGATCATGGTGACATTTAGACTAAACCGACAGACATGGTTGTGTCAATAGC
TCTTGTTTTACATGGACCTGTAATGCAAAAGGCCAAACTGAATTACCTTATTTTACACCAATATTTCAGGTTCGTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis