Browse Element(s) Details


Os.18497.1.S1_at

Description gb:AK103619.1
DB_XREF= gi:32988828
TID=Os.18497.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133L23, full insert sequence.
FL= gb:AK103619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4302011/11prefoldin subunit 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42990NANA3+23931862..23932581hypothetical protein
LOC_Os03g43000NANA3+23935836..23936075expressed protein
LOC_Os03g43010Os.49538.1.S1_at10/113+23943442..23951796H1flk, putative, expressed
LOC_Os03g43020Os.18497.1.S1_at11/113+23953206..23957468prefoldin subunit 4, putative, expressed
LOC_Os03g43030NANA3+23963520..23964414hypothetical protein
LOC_Os03g43040NANA3+23964668..23968115retrotransposon protein, putative, unclassified
LOC_Os03g43050OsAffx.13315.1.S1_at11/113+23969083..23970205hypothetical protein
LOC_Os03g43060OsAffx.13387.2.S1_at11/113+23972905..23977702F-box domain containing protein
LOC_Os03g43060OsAffx.13387.3.S1_x_at1/113+23972905..23977702F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18497.1.S1_at--795--5891Chr03:23957129..23957153 (25 bp)
GAGCTCCACGACGAAATCAAGCTCG
LOC_Os03g43020
Os.18497.1.S1_at--98--1451Chr03:23953732..23953756 (25 bp)
AGAACCTTGATGATGCTGGGAATGA
LOC_Os03g43020
Os.18497.1.S1_at--933--8191Chr03:23953714..23953738 (25 bp)
GGAATGAACTCATCCTGTCAGACGA
LOC_Os03g43020
Os.18497.1.S1_at--1083--9591Chr03:23953705..23953729 (25 bp)
TCATCCTGTCAGACGAAGACGTGGT
LOC_Os03g43020
Os.18497.1.S1_at--883--4091Chr03:23953692..23953716 (25 bp)
CGAAGACGTGGTGCGGTTCCAAATT
LOC_Os03g43020
Os.18497.1.S1_at--923--5311Chr03:23953664..23953688 (25 bp)
GAAGTGTTTGCCCACATGCCAAGGG
LOC_Os03g43020
Os.18497.1.S1_at--179--10711Chr03:23953657..23953681 (25 bp)
TTGCCCACATGCCAAGGGATGATGT
LOC_Os03g43020
Os.18497.1.S1_at--617--5811Chr03:23953508..23953532 (25 bp)
GACGCCATCAACCTGGAAGAAGATT
LOC_Os03g43020
Os.18497.1.S1_at--686--6551Chr03:23953487..23953511 (25 bp)
GATTAATATCGAGTAAGCTGCCGGA
LOC_Os03g43020
Os.18497.1.S1_at--69--7071Chr03:23953475..23953499 (25 bp)
GTAAGCTGCCGGATATTGAATGATA
LOC_Os03g43020
Os.18497.1.S1_at--370--7891Chr03:23953354..23953378 (25 bp)
GGTTAATTCTTATGCTGGATTAGAT
LOC_Os03g43020
Target Sequence 
GAGCTCCACGACGAAATCAAGCTCGCCAAGGAAGCAAATGAGAACCTTGATGATGCTGGGAATGAACTCATCCTGTCAGA
CGAAGACGTGGTGCGGTTCCAAATTGGAGAAGTGTTTGCCCACATGCCAAGGGATGATGTGGAGACAAGGCTGGAGCAGA
TGAAAGAGGATGCAGCTAAGAAGTTGGAGAGGCTGGAGCAGGAGAAGGAATCCNATCNGTCTCCCAGATGGCTGAACTGA
AGAAGATACTGTACGGAAAGTTCAAGGACGCCATCAACCTGGAAGAAGATTAATATCGAGTAAGCTGCCGGATATTGAAT
GATATGATGCTCTCTTAGTTGAGACTAGAGGAGCTGTGTTTGCTAGACTAAACTGTTTCTAGTGATTTAAGAAGACACGT
TTCTCGTGATGCATCAACATGGTTAATTCTTATGCTGGATTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis