Browse Element(s) Details


OsAffx.24338.1.S1_at

Description tigr:9630.m01912
TID=OsAffx.24338.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2000011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19970Os.51076.1.S1_at11/112+11749118..11753707tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19980OsAffx.2692.1.S1_at11/112+11755497..11757579hypothetical protein
LOC_Os02g19990Os.57017.1.S1_at11/112+11758498..11762729Reticulon family protein, expressed
LOC_Os02g19990Os.49538.1.S1_at1/112+11758498..11762729Reticulon family protein, expressed
LOC_Os02g20000OsAffx.24338.1.S1_at11/112+11771411..11777938hypothetical protein
LOC_Os02g20010NANA2+11779222..11785227retrotransposon protein, putative, LINE subclass
LOC_Os02g20020OsAffx.22947.1.S1_x_at7/112+11790432..11795016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20020OsAffx.22947.2.S1_x_at4/112+11790432..11795016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20020OsAffx.22947.3.S1_x_at2/112+11790432..11795016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20020OsAffx.22947.5.S1_x_at2/112+11790432..11795016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20030NANA2+11795827..11796300retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20040Os.50973.1.S1_at11/112+11798880..11799843transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g20050NANA2+11801936..11805226transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24338.1.S1_at--627--3131Chr02:11774420..11774444 (25 bp)
AATTTTCCTGGTGCAAGAGAGATGG
LOC_Os02g20000
OsAffx.24338.1.S1_at--785--4291Chr02:11774465..11774489 (25 bp)
CCTTTCTGAATTCCTACAGGGATAC
LOC_Os02g20000
OsAffx.24338.1.S1_at--80--8511Chr02:11774499..11774523 (25 bp)
TGGCATGGACGAGTGCAACGGCAAC
LOC_Os02g20000
OsAffx.24338.1.S1_at--132--10131Chr02:11776062..11776086 (25 bp)
TATCCTTTGGATGTTTAATTATGGT
LOC_Os02g20000
OsAffx.24338.1.S1_at--576--10051Chr02:11776081..11776105 (25 bp)
TATGGTTATGCCTCTATTACCGGTC
LOC_Os02g20000
OsAffx.24338.1.S1_at--558--3691Chr02:11776094..11776118 (25 bp)
CTATTACCGGTCGTGCTGAGGGAGT
LOC_Os02g20000
OsAffx.24338.1.S1_at--655--4571Chr02:11776613..11776637 (25 bp)
GCGCTGGAGAACGTGGCACCACAAG
LOC_Os02g20000
OsAffx.24338.1.S1_at--479--1711Chr02:11776630..11776654 (25 bp)
ACCACAAGCAGAGGCGCGGCCGAGA
LOC_Os02g20000
OsAffx.24338.1.S1_at--440--2531Chr02:11776750..11776774 (25 bp)
AACTAGATCGAAACTGCAGCAGAGC
LOC_Os02g20000
OsAffx.24338.1.S1_at--88--7711Chr02:11776784..11776808 (25 bp)
GGGTGTTGGCCCATTGCCATTCACG
LOC_Os02g20000
OsAffx.24338.1.S1_at--365--71Chr02:11776796..11776820 (25 bp)
ATTGCCATTCACGTTATCGGGCCCT
LOC_Os02g20000
Target Sequence 
AATTTTCCTGGTGCAAGAGAGATGGATCCGAGGAAGAAATTGATTCCTTTCTGAATTCCTACAGGGATACAATTTATCAT
GGCATGGACGAGTGCAACGGCAACGGGAAAAGATATATCCTTTGGATGTTTAATTATGGTTATGCCTCTATTACCGGTCG
TGCTGAGGGAGTGGAAGGGGGTTGGACAGCCGCCGCATCGGCGCTGGAGAACGTGGCACCACAAGCAGAGGCGCGGCCGA
GAGGAACGGCGGCAATGGAAGGGACGGAGAAAACGCGGACCGGCATCGGCGGCGGCAGCGAGACGGCGAGGAGCGAGATG
CGCGGAAAAAGAAAAAGAACTAGATCGAAACTGCAGCAGAGCAGAGGTCAGGGGTGTTGGCCCATTGCCATTCACGTTAT
CGGGCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis