Browse Element(s) Details


Os.57017.1.S1_at

Description gb:AK110752.1
DB_XREF= gi:32995961
TID=Os.57017.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57017 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-G08, full insert sequence.
FL= gb:AK110752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1999011/11Reticulon family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19924OsAffx.24336.1.S1_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.24336.1.S1_x_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12124.1.S1_at10/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.1.S1_x_at6/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.52238.1.S1_at3/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.3.S1_x_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.49936.2.A1_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.15708.1.S1_at1/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19950Os.41918.1.S1_x_at8/112+11737374..11741808expressed protein
LOC_Os02g19950Os.41918.1.S1_at8/112+11737374..11741808expressed protein
LOC_Os02g19950Os.47711.1.A1_s_at5/112+11737374..11741808expressed protein
LOC_Os02g19950Os.28219.1.S1_at3/112+11737374..11741808expressed protein
LOC_Os02g19960NANA2+11743444..11743953transposon protein, putative, unclassified
LOC_Os02g19970Os.51076.1.S1_at11/112+11749118..11753707tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19980OsAffx.2692.1.S1_at11/112+11755497..11757579hypothetical protein
LOC_Os02g19990Os.57017.1.S1_at11/112+11758498..11762729Reticulon family protein, expressed
LOC_Os02g19990Os.49538.1.S1_at1/112+11758498..11762729Reticulon family protein, expressed
LOC_Os02g20000OsAffx.24338.1.S1_at11/112+11771411..11777938hypothetical protein
LOC_Os02g20010NANA2+11779222..11785227retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57017.1.S1_at--102--2331Chr02:11759968..11759989 (22 bp)
AAAGTATTACCTGCTCTTCTGTTTG
LOC_Os02g19990
Os.57017.1.S1_at--286--10111Chr02:11760017..11760038 (22 bp)
TATGGAGACTTCTGGCCACAGGGTT
LOC_Os02g19990
Os.57017.1.S1_at--835--3451Chr02:11760119..11760143 (25 bp)
CAGGGTTTTTCACCAGCTTTACACT
LOC_Os02g19990
Os.57017.1.S1_at--477--5391Chr02:11760304..11760328 (25 bp)
GAAGCATGGAAGTCTTGTCCCCGCA
LOC_Os02g19990
Os.57017.1.S1_at--701--8791Chr02:11760371..11760395 (25 bp)
TGTTCAGTGTGAAGACCCGCATCAT
LOC_Os02g19990
Os.57017.1.S1_at--520--431Chr02:11762401..11762420 (20 bp)
ATCATTGCAGCTTTCATTTCGGTAG
LOC_Os02g19990
Os.57017.1.S1_at--1078--191Chr02:11762411..11762435 (25 bp)
ATTTCGGTAGTAATCCTGCGGTATA
LOC_Os02g19990
Os.57017.1.S1_at--1107--2991Chr02:11762543..11762567 (25 bp)
AATGATCTGCTGTTCCATGTCTAGT
LOC_Os02g19990
Os.57017.1.S1_at--821--8731Chr02:11762613..11762637 (25 bp)
TGTCAGGTCTCTCGAATGCTTCTAT
LOC_Os02g19990
Os.57017.1.S1_at--649--10071Chr02:11762640..11762664 (25 bp)
TAGTGAAGCAATCAGCGCCAGCGCA
LOC_Os02g19990
Os.57017.1.S1_at--487--10151Chr02:11762701..11762725 (25 bp)
TATCTGCTATGTTTGCGCGGCTTAA
LOC_Os02g19990
Target Sequence 
AAAGTATTACCTGCTCTTCTGTTTGGTGCTAAATACGGTAGTCTGGTTACAGTATGGAGACTTCTGGCCACAGGGTTTTT
CACCAGCTTTACACTCCCAAAGCTTTATAGCTGCTATTCAAGCCAAATTCATAAGAGAGTTGAAATTTTGAGAGATCGGG
CTCTAGAAGCATGGAAGTCTTGTCCCCGCAAGAAACTCGTTGCGGGTACAGCAGTGACAATGTGCTGGAACATGTTCAGT
GTGAAGACCCGCATCATTGCAGCTTTCATTTCGGTAGTAATCCTGCGGTATAATCAGAAGTATCGCAAGGCTGTGGTGAA
TGCAGGAGCTGAAAGCTGTCAAGATGAACAAGAGCAGAAAATGGAGATAGAAGAATCATAAATATGATCATTTCTCTGTA
ATGATCTGCTGTTCCATGTCTAGTGGTTCTACTATTTCTTTTCTTTCTCCCGTAAGAGAGGTTGGAACATGTCAGGTCTC
TCGAATGCTTCTATTATAGTGAAGCAATCAGCGCCAGCGCAGTGCTGTTGTATGTATGCTGGTAAATAAATTTCAAGTAT
CTGCTATGTTTGCGCGGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis