Browse Element(s) Details


Os.51076.1.S1_at

Description gb:AK060537.1
DB_XREF= gi:32970555
TID=Os.51076.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D11, full insert sequence.
FL= gb:AK060537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1997011/11tyrosine/nicotianamine aminotransferases family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19924OsAffx.24336.1.S1_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.24336.1.S1_x_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12124.1.S1_at10/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.1.S1_x_at6/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.52238.1.S1_at3/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.3.S1_x_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.49936.2.A1_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.15708.1.S1_at1/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19950Os.41918.1.S1_x_at8/112+11737374..11741808expressed protein
LOC_Os02g19950Os.41918.1.S1_at8/112+11737374..11741808expressed protein
LOC_Os02g19950Os.47711.1.A1_s_at5/112+11737374..11741808expressed protein
LOC_Os02g19950Os.28219.1.S1_at3/112+11737374..11741808expressed protein
LOC_Os02g19960NANA2+11743444..11743953transposon protein, putative, unclassified
LOC_Os02g19970Os.51076.1.S1_at11/112+11749118..11753707tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19980OsAffx.2692.1.S1_at11/112+11755497..11757579hypothetical protein
LOC_Os02g19990Os.57017.1.S1_at11/112+11758498..11762729Reticulon family protein, expressed
LOC_Os02g19990Os.49538.1.S1_at1/112+11758498..11762729Reticulon family protein, expressed
LOC_Os02g20000OsAffx.24338.1.S1_at11/112+11771411..11777938hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001560biological_processregulation of cell growth by extracellular stimulus
GO:0009058biological_processbiosynthesis
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51076.1.S1_at--851--10471Chr02:11752277..11752301 (25 bp)
TTACATGTCCACACAAGCCAGAGGG
LOC_Os02g19970
Os.51076.1.S1_at--61--2251Chr02:11752421..11752445 (25 bp)
AAATTGGATCTCTCTTACTTGGATG
LOC_Os02g19970
Os.51076.1.S1_at--468--711Chr02:11752455..11752479 (25 bp)
ATGATATGGACTTCTGCTGCAGGTT
LOC_Os02g19970
Os.51076.1.S1_at--478--5191Chr02:11753350..11753374 (25 bp)
GAATTGGGTTCGCATCACTTTCGCC
LOC_Os02g19970
Os.51076.1.S1_at--943--351Chr02:11753363..11753387 (25 bp)
ATCACTTTCGCCATCGATATACCAT
LOC_Os02g19970
Os.51076.1.S1_at--545--311Chr02:11753381..11753405 (25 bp)
ATACCATCTCTTGTGGATGCCTTTG
LOC_Os02g19970
Os.51076.1.S1_at--526--7951Chr02:11753409..11753433 (25 bp)
GGATAAAATCTTTCTGCCAGAGGCA
LOC_Os02g19970
Os.51076.1.S1_at--381--31Chr02:11753479..11753503 (25 bp)
ATTGTGGTGCATCGGCAACTACGCG
LOC_Os02g19970
Os.51076.1.S1_at--1129--7591Chr02:11753507..11753531 (25 bp)
GGGCACCCAAATGTTGTTCTTAATA
LOC_Os02g19970
Os.51076.1.S1_at--126--6871Chr02:11753582..11753606 (25 bp)
GTATTCTTCCGGCAGGTGAACTCAA
LOC_Os02g19970
Os.51076.1.S1_at--568--6651Chr02:11753682..11753706 (25 bp)
GTTGATTTGAATACGTCAGCCTGTA
LOC_Os02g19970
Target Sequence 
TTACATGTCCACACAAGCCAGAGGGATCAATGTTTGTGATGGTAAAATTGGATCTCTCTTACTTGGATGGCTTCCATGAT
GATATGGACTTCTGCTGCAGGTTGGCAAAAGAGGAGTCTGTGATAGTTTTGCCAGGGAGTGCATTAGGATTGAAGAATTG
GGTTCGCATCACTTTCGCCATCGATATACCATCTCTTGTGGATGCCTTTGAAAGGATAAAATCTTTCTGCCAGAGGCATG
GCAAACTGGAAACCTAAGCACAAAGGTGTTGAGATATTTCATTATTGTGGTGCATCGGCAACTACGCGTTGGGGCACCCA
AATGTTGTTCTTAATAATCTGTTGCTGTGACCAAGATGATCATTTACCTTGTCAAACATGTATATCGTATTCTTCCGGCA
GGTGAACTCAAACCTATCTTGTATTTGTAATGTATTAATTGTCGGGAAATGCTGTAATCTATAACTGTAAGTCATTCTTG
GTTACAGTTGATTTGAATACGTCAGCCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis