Browse Element(s) Details


OsAffx.24336.1.S1_at

Description tigr:9630.m01906
TID=OsAffx.24336.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=tyrosine aminotransferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1992411/11tyrosine/nicotianamine aminotransferases family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19880OsAffx.12123.1.S1_at11/112+11693449..11699182Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19890Os.54012.1.S1_x_at11/112+11701991..11708366NB-ARC domain containing protein, expressed
LOC_Os02g19890Os.25071.1.A1_at9/112+11701991..11708366NB-ARC domain containing protein, expressed
LOC_Os02g19900NANA2+11709902..11710459hypothetical protein
LOC_Os02g19924OsAffx.24336.1.S1_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.24336.1.S1_x_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12124.1.S1_at10/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.1.S1_x_at6/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.52238.1.S1_at3/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.3.S1_x_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.49936.2.A1_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.15708.1.S1_at1/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19950Os.41918.1.S1_x_at8/112+11737374..11741808expressed protein
LOC_Os02g19950Os.41918.1.S1_at8/112+11737374..11741808expressed protein
LOC_Os02g19950Os.47711.1.A1_s_at5/112+11737374..11741808expressed protein
LOC_Os02g19950Os.28219.1.S1_at3/112+11737374..11741808expressed protein
LOC_Os02g19960NANA2+11743444..11743953transposon protein, putative, unclassified
LOC_Os02g19970Os.51076.1.S1_at11/112+11749118..11753707tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19980OsAffx.2692.1.S1_at11/112+11755497..11757579hypothetical protein
LOC_Os02g19990Os.57017.1.S1_at11/112+11758498..11762729Reticulon family protein, expressed
LOC_Os02g19990Os.49538.1.S1_at1/112+11758498..11762729Reticulon family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001560biological_processregulation of cell growth by extracellular stimulus
GO:0009058biological_processbiosynthesis
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24336.1.S1_at--974--7811Chr02:11735983..11736224 (25 bp)
GGTCATCTGCCCAGGGAGTGGATTA
LOC_Os02g19924
OsAffx.24336.1.S1_at--1029--7111Chr02:11735984..11736225 (25 bp)
GTCATCTGCCCAGGGAGTGGATTAG
LOC_Os02g19924
OsAffx.24336.1.S1_at--1146--2631Chr02:11736293..11736317 (25 bp)
AACCAAGTGTTTCTGCAAGAGGCAT
LOC_Os02g19924
OsAffx.24336.1.S1_at--98--3231Chr02:11736296..11736320 (25 bp)
CAAGTGTTTCTGCAAGAGGCATGGT
LOC_Os02g19924
OsAffx.24336.1.S1_at--186--5131Chr02:11736440..11736464 (25 bp)
GCACACATTATGTCGTCAAATTCCT
LOC_Os02g19924
OsAffx.24336.1.S1_at--302--3311Chr02:11736441..11736465 (25 bp)
CACACATTATGTCGTCAAATTCCTC
LOC_Os02g19924
OsAffx.24336.1.S1_at--542--4291Chr02:11736462..11736486 (25 bp)
CCTCAATCGAGGAACTTGTGTATCT
LOC_Os02g19924
OsAffx.24336.1.S1_at--193--3751Chr02:11736463..11736487 (25 bp)
CTCAATCGAGGAACTTGTGTATCTT
LOC_Os02g19924
OsAffx.24336.1.S1_at--870--3031Chr02:11736466..11736490 (25 bp)
AATCGAGGAACTTGTGTATCTTATT
LOC_Os02g19924
OsAffx.24336.1.S1_at--177--9391Chr02:11736468..11736492 (25 bp)
TCGAGGAACTTGTGTATCTTATTAG
LOC_Os02g19924
OsAffx.24336.1.S1_at--742--6191Chr02:11736470..11736494 (25 bp)
GAGGAACTTGTGTATCTTATTAGTT
LOC_Os02g19924
Target Sequence 
GGTCATCTGCCCAGGGAGTGGATTAGGGATGAAGAATTGGCTCCGGATAACCTTCGCGGTTGATCCACAATTACTAGAGG
ATGGTCTAGAGAGAACCAAGTGTTTCTGCAAGAGGCATGGTAAAATCAAGGAAGCCAGCTAGCTCGTGAATAGTTTCAGG
CTTTCAGCATCCGTACTCATGGATGTGTAGAACCGGCATCATGTGAGAATAAAGTTGAATCAAGTTGGACACTTAAATCA
GCACACATTATGTCGTCAAATTCCTCAATCGAGGAACTTGTGTATCTTATTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis