Browse Element(s) Details


Os.54012.1.S1_x_at

Description gb:AK101276.1
DB_XREF= gi:32986485
TID=Os.54012.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033B21, full insert sequence.
FL= gb:AK101276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1989011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19870NANA2+11674414..11684362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g19880OsAffx.12123.1.S1_at11/112+11693449..11699182Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19890Os.54012.1.S1_x_at11/112+11701991..11708366NB-ARC domain containing protein, expressed
LOC_Os02g19890Os.25071.1.A1_at9/112+11701991..11708366NB-ARC domain containing protein, expressed
LOC_Os02g19900NANA2+11709902..11710459hypothetical protein
LOC_Os02g19924OsAffx.24336.1.S1_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.24336.1.S1_x_at11/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12124.1.S1_at10/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.1.S1_x_at6/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.52238.1.S1_at3/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.12125.3.S1_x_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924Os.49936.2.A1_at2/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g19924OsAffx.15708.1.S1_at1/112+11716910..11736542tyrosine/nicotianamine aminotransferases family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54012.1.S1_x_at--556--2891Chr02:11704283..11704307 (25 bp)
AAGGGTGCATGCTTGTCGTGTTCAT
LOC_Os02g19890
Os.54012.1.S1_x_at--885--7771Chr02:11704253..11704277 (25 bp)
GGTGCTTGATCTTATCACATCATTG
LOC_Os02g19890
Os.54012.1.S1_x_at--655--5671Chr02:11704208..11704232 (25 bp)
GACATCATTAGGTGGTCAGCAGCCC
LOC_Os02g19890
Os.54012.1.S1_x_at--314--251Chr02:11704181..11704205 (25 bp)
ATATCATCCAAACAGGGCTCGCCGG
LOC_Os02g19890
Os.54012.1.S1_x_at--89--7591Chr02:11704167..11704191 (25 bp)
GGGCTCGCCGGTTATGCCTTCAAAA
LOC_Os02g19890
Os.54012.1.S1_x_at--862--5971Chr02:11704114..11704138 (25 bp)
GAGAAAATGAAGTGGCCCCGCGTGA
LOC_Os02g19890
Os.54012.1.S1_x_at--410--1031Chr02:11704090..11704114 (25 bp)
AGGTCACTAATCGTATTCCCTCATG
LOC_Os02g19890
Os.54012.1.S1_x_at--393--2511Chr02:11704060..11704084 (25 bp)
AACTTGTTGCCATCCCTTTCGAGAT
LOC_Os02g19890
Os.54012.1.S1_x_at--61--6051Chr02:11704040..11704064 (25 bp)
GAGATTCCGTATTTTGCGCGTACTG
LOC_Os02g19890
Os.54012.1.S1_x_at--15--2531Chr02:11703846..11703870 (25 bp)
AACTTCCATCAACAGTCGTTCATCT
LOC_Os02g19890
Os.54012.1.S1_x_at--692--1391Chr02:11703817..11703841 (25 bp)
AGACTGGTGCGCCTACTAATTGATG
LOC_Os02g19890
Target Sequence 
AAGGGTGCATGCTTGTCGTGTTCATGATATGGTGCTTGATCTTATCACATCATTGTCAAATGAAACAAATTTTGTGACAT
CATTAGGTGGTCAGCAGCCCACATATCATCCAAACAGGGCTCGCCGGTTATGCCTTCAAAACAGCATATATGACCATACG
ATACGACAGGAGAAAATGAAGTGGCCCCGCGTGAGGTCACTAATCGTATTCCCTCATGCTACCAACTTGTTGCCATCCCT
TTCGAGATTCCGTATTTTGCGCGTACTGGATTTAGAAGGTTGTCAAGACTTGAAGAATCACCAAATTGAGGGTATCAGTG
ATTTGTTTCATTTGAGGTCTCTAGTACTGAAGGATACAAATATTGTTAGTCTCCCCAAAAAGATTGGCAACCTAAGTTGT
TTACATACACTGGACATAAGGCACACTATCATAACTGAACTTCCATCAACAGTCGTTCATCTAAGAAGACTGGTGCGCCT
ACTAATTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54012.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis