Browse Element(s) Details


OsAffx.5846.1.S1_at

Description tigr:9636.m01683
TID=OsAffx.5846.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1675011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16710Os.54043.1.S1_at11/118+10211422..10214225F-box domain containing protein, expressed
LOC_Os08g16720Os.18628.1.S1_at11/118+10215452..10216473transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g16730NANA8+10221180..10221476hypothetical protein
LOC_Os08g16740Os.54043.1.S1_at1/118+10226160..10228406hypothetical protein
LOC_Os08g16750OsAffx.5846.1.S1_at11/118+10238964..10239264hypothetical protein
LOC_Os08g16760NANA8+10242761..10246000Zinc knuckle family protein
LOC_Os08g16770NANA8+10246310..10249360transposon protein, putative, Mutator sub-class
LOC_Os08g16780Os.57070.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.29239.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780Os.6249.1.A1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.15916.1.S1_at1/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16790Os.50148.1.S1_at10/118+10263233..10264396expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5846.1.S1_at--851--10351Chr08:10239168..10239218 (25 bp)
TTTTTGGGCTAGTCTGGATGTTTGT
LOC_Os08g16750
OsAffx.5846.1.S1_at--265--4871Chr08:10239161..10239211 (25 bp)
GCTAGTCTGGATGTTTGTGTTTTAT
LOC_Os08g16750
OsAffx.5846.1.S1_at--324--751Chr08:10239151..10239175 (25 bp)
ATGTTTGTGTTTTATCCTCCATCGC
LOC_Os08g16750
OsAffx.5846.1.S1_at--80--10351Chr08:10239141..10239165 (25 bp)
TTTATCCTCCATCGCTGGCAAGATT
LOC_Os08g16750
OsAffx.5846.1.S1_at--281--5971Chr08:10239116..10239140 (25 bp)
GAGAAGACTTAATTCCAGTCGGTGT
LOC_Os08g16750
OsAffx.5846.1.S1_at--883--2031Chr08:10239110..10239134 (25 bp)
ACTTAATTCCAGTCGGTGTTGTTAT
LOC_Os08g16750
OsAffx.5846.1.S1_at--498--7191Chr08:10239055..10239123 (25 bp)
GTCGGTGTTGTTATGAGAGGCTCCA
LOC_Os08g16750
OsAffx.5846.1.S1_at--1024--691Chr08:10239043..10239064 (22 bp)
ATGAGAGGCTCCATCAGTTGCAACT
LOC_Os08g16750
OsAffx.5846.1.S1_at--519--4791Chr08:10239036..10239060 (25 bp)
GCTCCATCAGTTGCAACTCGCTGTG
LOC_Os08g16750
OsAffx.5846.1.S1_at--264--2551Chr08:10239022..10239046 (25 bp)
AACTCGCTGTGGTCATGCTTGTCAC
LOC_Os08g16750
OsAffx.5846.1.S1_at--427--8591Chr08:10239013..10239037 (25 bp)
TGGTCATGCTTGTCACCGTCGACAT
LOC_Os08g16750
Target Sequence 
TTTTTGGGCTAGTCTGGATGTTTGTGTTTTATCCTCCATCGCTGGCAAGATTGAGAAGACTTAATTCCAGTCGGTGTTGT
TATGAGAGGCTCCATCAGTTGCAACTCGCTGTGGTCATGCTTGTCACCGTCGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis