Browse Element(s) Details


Os.18628.1.S1_at

Description gb:AK107040.1
DB_XREF= gi:32992249
TID=Os.18628.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18628 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C02, full insert sequence.
FL= gb:AK107040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1672011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16670OsAffx.17030.1.S1_at11/118+10191817..10195370F-box domain containing protein
LOC_Os08g16680Os.46785.2.S1_x_at2/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.442.1.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.30226.2.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16690OsAffx.5844.1.S1_at10/118+10201181..10202956hypothetical protein
LOC_Os08g16690Os.54043.1.S1_at1/118+10201181..10202956hypothetical protein
LOC_Os08g16700OsAffx.5845.1.S1_at11/118+10206743..10207506hypothetical protein
LOC_Os08g16710Os.54043.1.S1_at11/118+10211422..10214225F-box domain containing protein, expressed
LOC_Os08g16720Os.18628.1.S1_at11/118+10215452..10216473transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g16730NANA8+10221180..10221476hypothetical protein
LOC_Os08g16740Os.54043.1.S1_at1/118+10226160..10228406hypothetical protein
LOC_Os08g16750OsAffx.5846.1.S1_at11/118+10238964..10239264hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18628.1.S1_at--867--9171Chr08:10215764..10215788 (25 bp)
TGCCGTCCGACGCAGAGTCTGGCAC
LOC_Os08g16720
Os.18628.1.S1_at--917--1331Chr08:10215751..10215775 (25 bp)
AGAGTCTGGCACGTCTCCGCTGTGG
LOC_Os08g16720
Os.18628.1.S1_at--994--9151Chr08:10215624..10215648 (25 bp)
TGCGCCATCCTGCACGGATACTAGG
LOC_Os08g16720
Os.18628.1.S1_at--589--911Chr08:10215602..10215626 (25 bp)
AGGCTCTTTTAGTTGTAGGCACCAC
LOC_Os08g16720
Os.18628.1.S1_at--863--6911Chr08:10215588..10215612 (25 bp)
GTAGGCACCACCTTGTAACAGGACA
LOC_Os08g16720
Os.18628.1.S1_at--291--951Chr08:10215569..10215593 (25 bp)
AGGACAACTCCGATTCTTGATGTAA
LOC_Os08g16720
Os.18628.1.S1_at--672--6271Chr08:10215551..10215575 (25 bp)
GATGTAACTAATGTCTGGCACAACT
LOC_Os08g16720
Os.18628.1.S1_at--784--3251Chr08:10215531..10215555 (25 bp)
CAACTAATCATGTGCCTCTATCTAC
LOC_Os08g16720
Os.18628.1.S1_at--44--7291Chr08:10215520..10215544 (25 bp)
GTGCCTCTATCTACTATATTTACAT
LOC_Os08g16720
Os.18628.1.S1_at--777--2091Chr08:10215499..10215523 (25 bp)
ACATCATCTTGTATTATCATGGCTG
LOC_Os08g16720
Os.18628.1.S1_at--712--411Chr08:10215484..10215508 (25 bp)
ATCATGGCTGTAACTATATGTCTAT
LOC_Os08g16720
Target Sequence 
TGCCGTCCGACGCAGAGTCTGGCACGTCTCCGCTGTGGCGCCGCCGCCGCCGCCACCATCCCTACCAGAGGCGCGGCTCC
AGCATCGCCTGCTCGCCGCGCGCGGTCCNGGTCGCCGGCGGCCACCATCACCACCCTCGCTGCGCCATCCTGCACGGATA
CTAGGCTCTTTTAGTTGTAGGCACCACCTTGTAACAGGACAACTCCGATTCTTGATGTAACTAATGTCTGGCACAACTAA
TCATGTGCCTCTATCTACTATATTTACATCATCTTGTATTATCATGGCTGTAACTATATGTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis