Browse Element(s) Details


OsAffx.5845.1.S1_at

Description tigr:9636.m01678
TID=OsAffx.5845.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1670011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16650OsAffx.17029.1.S1_at11/118+10181751..10183076hypothetical protein
LOC_Os08g16660Os.7891.2.S1_at10/118+10183796..10186859Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g16670OsAffx.17030.1.S1_at11/118+10191817..10195370F-box domain containing protein
LOC_Os08g16680Os.46785.2.S1_x_at2/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.442.1.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.30226.2.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16690OsAffx.5844.1.S1_at10/118+10201181..10202956hypothetical protein
LOC_Os08g16690Os.54043.1.S1_at1/118+10201181..10202956hypothetical protein
LOC_Os08g16700OsAffx.5845.1.S1_at11/118+10206743..10207506hypothetical protein
LOC_Os08g16710Os.54043.1.S1_at11/118+10211422..10214225F-box domain containing protein, expressed
LOC_Os08g16720Os.18628.1.S1_at11/118+10215452..10216473transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g16730NANA8+10221180..10221476hypothetical protein
LOC_Os08g16740Os.54043.1.S1_at1/118+10226160..10228406hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5845.1.S1_at--1110--5331Chr08:10207450..10207474 (25 bp)
GAAGTTCTCGTTTGACGATCTGCCG
LOC_Os08g16700
OsAffx.5845.1.S1_at--521--9671Chr08:10207385..10207409 (25 bp)
TCAGCCTCCGCCTCGAGAAATGCGA
LOC_Os08g16700
OsAffx.5845.1.S1_at--1100--1411Chr08:10207370..10207394 (25 bp)
AGAAATGCGACATGCCGCCGGGCTT
LOC_Os08g16700
OsAffx.5845.1.S1_at--815--4491Chr08:10207239..10207263 (25 bp)
GCCGTGCTCGAGTTGTCAAACCTGG
LOC_Os08g16700
OsAffx.5845.1.S1_at--581--3271Chr08:10207223..10207247 (25 bp)
CAAACCTGGGTACCATGGATGGCGC
LOC_Os08g16700
OsAffx.5845.1.S1_at--1158--1571Chr08:10207154..10207178 (25 bp)
AGCTCAGTGTCACCATGCCGATGGG
LOC_Os08g16700
OsAffx.5845.1.S1_at--701--9451Chr08:10207121..10207145 (25 bp)
TCGGCTGCCGAATCACAGAGGCGCT
LOC_Os08g16700
OsAffx.5845.1.S1_at--358--4171Chr08:10207095..10207119 (25 bp)
CCCAAGCTCGAGGATGCGTACATCT
LOC_Os08g16700
OsAffx.5845.1.S1_at--322--7031Chr08:10207078..10207102 (25 bp)
GTACATCTCATTCGATTGCGTCTTC
LOC_Os08g16700
OsAffx.5845.1.S1_at--935--3231Chr08:10207047..10207071 (25 bp)
CAAGAATTCCTTGACGCTTTCCAAA
LOC_Os08g16700
OsAffx.5845.1.S1_at--963--2691Chr08:10207006..10207029 (24 bp)
AAGCTCTGTTTCATGGTCGCTGAGA
LOC_Os08g16700
Target Sequence 
GAAGTTCTCGTTTGACGATCTGCCGCACCTTCCCGGACCCGCCCTCTTCTCCTGCGCCGAACTCGTCAGCCTCCGCCTCG
AGAAATGCGACATGCCGCCGGGCTTTCCGGGCTTCCCCAACCTCGAGCGCCTCTACCTCGTGGGTGTCACCCTCCCGTAC
GCCCGTGCCGGCACGCAGCTCGAACACCTCATCCTCGCGTCAGAGAACCTCGCCGTGCTCGAGTTGTCAAACCTGGGTAC
CATGGATGGCGCGGTCGTGGTGGACCCGTGGGCCATCAGAGCGCCCAACCTCCGGGAGCTCAGTGTCACCATGCCGATGG
GTGTCGACTTCGGCTGCCGAATCACAGAGGCGCTCCCCAAGCTCGAGGATGCGTACATCTCATTCGATTGCGTCTTCGGA
ACCCAAGAATTCCTTGACGCTTTCCAAAATATTTCTACTGTCAATAAGCTCTGTTTCATGGTCGCTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis