Browse Element(s) Details


Os.6249.1.A1_at

Description gb:AK100341.1
DB_XREF= gi:32985550
TID=Os.6249.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6249 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082B07, full insert sequence.
FL= gb:AK100341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1678011/11Sin-like protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16740Os.54043.1.S1_at1/118+10226160..10228406hypothetical protein
LOC_Os08g16750OsAffx.5846.1.S1_at11/118+10238964..10239264hypothetical protein
LOC_Os08g16760NANA8+10242761..10246000Zinc knuckle family protein
LOC_Os08g16770NANA8+10246310..10249360transposon protein, putative, Mutator sub-class
LOC_Os08g16780Os.57070.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.29239.1.S1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780Os.6249.1.A1_at11/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16780OsAffx.15916.1.S1_at1/118+10251371..10262586Sin-like protein conserved region containing protein, expressed
LOC_Os08g16790Os.50148.1.S1_at10/118+10263233..10264396expressed protein
LOC_Os08g16800OsAffx.2692.1.S1_at3/118+10278480..10278992hypothetical protein
LOC_Os08g16810Os.18297.1.S1_at10/118+10280715..10281496expressed protein
LOC_Os08g16820OsAffx.29241.1.S1_s_at11/118+10285855..10286478hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6249.1.A1_at--1134--3071Chr08:10261990..10262014 (25 bp)
AATCACTGTGTTTGTCAGCTCACTC
LOC_Os08g16780
Os.6249.1.A1_at--664--1571Chr08:10262006..10262030 (25 bp)
AGCTCACTCGTGAGTTCTGTTACCA
LOC_Os08g16780
Os.6249.1.A1_at--680--9431Chr08:10262021..10262045 (25 bp)
TCTGTTACCACCTATTGACCTTATT
LOC_Os08g16780
Os.6249.1.A1_at--1056--2491Chr08:10262187..10262211 (25 bp)
AACATCTAGGCCAGACTCCAGGAAT
LOC_Os08g16780
Os.6249.1.A1_at--648--7871Chr08:10262212..10262236 (25 bp)
GGTTAGCATTGACTGCATGTTTCCA
LOC_Os08g16780
Os.6249.1.A1_at--276--4951Chr08:10262226..10262250 (25 bp)
GCATGTTTCCAGATTTTCGTTCCCT
LOC_Os08g16780
Os.6249.1.A1_at--927--591Chr08:10262315..10262339 (25 bp)
ATGCCTGCTGCCGTTGTTAGAATGA
LOC_Os08g16780
Os.6249.1.A1_at--233--791Chr08:10262363..10262387 (25 bp)
ATGTGTATCCAATCCAAGTTCCTTC
LOC_Os08g16780
Os.6249.1.A1_at--950--5031Chr08:10262414..10262438 (25 bp)
GCAGAGCTGCCATATTACGACTTAG
LOC_Os08g16780
Os.6249.1.A1_at--36--6891Chr08:10262448..10262472 (25 bp)
GTATATTTTCTGGAACACCCGTCAA
LOC_Os08g16780
Os.6249.1.A1_at--569--2171Chr08:10262462..10262486 (25 bp)
ACACCCGTCAATTGTTTTTCTCTGA
LOC_Os08g16780
Target Sequence 
AATCACTGTGTTTGTCAGCTCACTCGTGAGTTCTGTTACCACCTATTGACCTTATTATAAAATTTCATTTGTTATTATTG
CCAATCTAATAAGCGATTTACTCCTTTATTTTGTTTATTCCAACAGTTTTTGAAGTTCTTCAGAGTTACGGAAATCAGTA
CATAAGCATCTGAGATTTAGGTTTATTGCAAGTTCACAACATCTAGGCCAGACTCCAGGAATGGTTAGCATTGACTGCAT
GTTTCCAGATTTTCGTTCCCTGGGAACTATATACCGTCAGAAGGCTTAACGTTGAGACTGCATGTGACATGTAGTTGCAG
AATGGATGCCTGCTGCCGTTGTTAGAATGATATTTTGTTAGTGTTAATTGGGAATGTGTATCCAATCCAAGTTCCTTCTG
CCCTCCTAATCAAGGGGGCAATTTGCAGAGCTGCCATATTACGACTTAGCAAATAGGAGTATATTTTCTGGAACACCCGT
CAATTGTTTTTCTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6249.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis