Browse Element(s) Details


Os.6767.1.S1_at

Description gb:AK063209.1
DB_XREF= gi:32973227
TID=Os.6767.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6767 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-D04, full insert sequence.
FL= gb:AK063209.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1683011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16790Os.50148.1.S1_at10/118+10263233..10264396expressed protein
LOC_Os08g16800OsAffx.2692.1.S1_at3/118+10278480..10278992hypothetical protein
LOC_Os08g16810Os.18297.1.S1_at10/118+10280715..10281496expressed protein
LOC_Os08g16820OsAffx.29241.1.S1_s_at11/118+10285855..10286478hypothetical protein
LOC_Os08g16830Os.6767.1.S1_at11/118+10287896..10288799expressed protein
LOC_Os08g16840Os.17340.1.S1_at11/118+10290580..10294388F-box domain containing protein, expressed
LOC_Os08g16850NANA8+10295098..10295376hypothetical protein
LOC_Os08g16860Os.23377.1.A1_s_at11/118+10310634..10314808F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6767.1.S1_at--524--7931Chr08:10288563..10288587 (25 bp)
GGATTAATGGAGCTCATCTGAGACC
LOC_Os08g16830
Os.6767.1.S1_at--1014--471Chr08:10288548..10288572 (25 bp)
ATCTGAGACCTCATGTCCAGGTGGA
LOC_Os08g16830
Os.6767.1.S1_at--70--5391Chr08:10288376..10288549 (25 bp)
GAAGAATCGCATATCACTGAAGGCA
LOC_Os08g16830
Os.6767.1.S1_at--1114--2971Chr08:10288220..10288244 (25 bp)
AATGTCAACAGTGGACCGGCCGACA
LOC_Os08g16830
Os.6767.1.S1_at--990--3871Chr08:10288111..10288135 (25 bp)
CTGTCTCAGCTTTCAGCTTCTGAAG
LOC_Os08g16830
Os.6767.1.S1_at--248--7511Chr08:10288032..10288056 (25 bp)
GTGGTAATCTCTGAATGACTGAATT
LOC_Os08g16830
Os.6767.1.S1_at--1063--6891Chr08:10288004..10288028 (25 bp)
GTATCCAGTTTATCAGTAGTGCACA
LOC_Os08g16830
Os.6767.1.S1_at--807--3111Chr08:10287945..10287969 (25 bp)
AATATTCTTGATTTATCGTCTGCAC
LOC_Os08g16830
Os.6767.1.S1_at--352--10151Chr08:10287932..10287956 (25 bp)
TATCGTCTGCACAATGATGTCCCAG
LOC_Os08g16830
Os.6767.1.S1_at--589--6271Chr08:10287917..10287941 (25 bp)
GATGTCCCAGACATTGTTCTTGCAG
LOC_Os08g16830
Os.6767.1.S1_at--287--2071Chr08:10287907..10287931 (25 bp)
ACATTGTTCTTGCAGTTCCAGGTTC
LOC_Os08g16830
Target Sequence 
GGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATT
CAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGG
CGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGG
CGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGCCTTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGC
TTCTGAAGCTGTGTGAGTGGTNNGGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGNTGTGGTAATCTCTGAA
TGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCT
TGATTTATCGTCTGCACAATGATGTCCCAGACATTGTTCTTGCAGTTCCAGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis