Browse Element(s) Details


Os.17340.1.S1_at

Description gb:AK120307.1
DB_XREF= gi:37989930
TID=Os.17340.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17340 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013054G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013054G18, full insert sequence.
FL= gb:AK120307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1684011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16800OsAffx.2692.1.S1_at3/118+10278480..10278992hypothetical protein
LOC_Os08g16810Os.18297.1.S1_at10/118+10280715..10281496expressed protein
LOC_Os08g16820OsAffx.29241.1.S1_s_at11/118+10285855..10286478hypothetical protein
LOC_Os08g16830Os.6767.1.S1_at11/118+10287896..10288799expressed protein
LOC_Os08g16840Os.17340.1.S1_at11/118+10290580..10294388F-box domain containing protein, expressed
LOC_Os08g16850NANA8+10295098..10295376hypothetical protein
LOC_Os08g16860Os.23377.1.A1_s_at11/118+10310634..10314808F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17340.1.S1_at--657--6611Chr08:10291152..10291176 (25 bp)
GTTGGCATAGTTCCTGATGATTATC
LOC_Os08g16840
Os.17340.1.S1_at--249--5631Chr08:10291104..10291128 (25 bp)
GACAGGGAAGCCATTGCAATTTCGA
LOC_Os08g16840
Os.17340.1.S1_at--328--2711Chr08:10291062..10291086 (25 bp)
AAGCATCTCGTAATTAGGTTCTCAA
LOC_Os08g16840
Os.17340.1.S1_at--470--3291Chr08:10291040..10291064 (25 bp)
CAAAGCTATCTGTTGTTGGCCTCAA
LOC_Os08g16840
Os.17340.1.S1_at--468--1011Chr08:10290986..10291010 (25 bp)
AGGTTCTTGACTTGTATGGCTGCGC
LOC_Os08g16840
Os.17340.1.S1_at--315--10111Chr08:10290972..10290996 (25 bp)
TATGGCTGCGCAAATTTGACACTCA
LOC_Os08g16840
Os.17340.1.S1_at--785--7251Chr08:10290874..10290898 (25 bp)
GTCCTCCTTCCACATGGGTAGGTAT
LOC_Os08g16840
Os.17340.1.S1_at--805--9711Chr08:10290787..10290811 (25 bp)
TCAAGTTCAACGATCACCTCAGGTG
LOC_Os08g16840
Os.17340.1.S1_at--718--1751Chr08:10290772..10290796 (25 bp)
ACCTCAGGTGTTTGTTCTCTGACAT
LOC_Os08g16840
Os.17340.1.S1_at--263--9751Chr08:10290682..10290706 (25 bp)
TAATACCCTGTATAGTGCTGCTTTA
LOC_Os08g16840
Os.17340.1.S1_at--869--9091Chr08:10290667..10290691 (25 bp)
TGCTGCTTTACTCATCTTTTCCATG
LOC_Os08g16840
Target Sequence 
GTTGGCATAGTTCCTGATGATTATCTAAGAGATTGCCCCCAAGATGGTGACAGGGAAGCCATTGCAATTTCGAAGTTCAT
GCAAAATTTGAAGCATCTCGTAATTAGGTTCTCAAAGCTATCTGTTGTTGGCCTCAACGCAATATCAGGAGGATGCAAGG
AATTGGAGGTTCTTGACTTGTATGGCTGCGCAAATTTGACACTCAGGGGNATACAACAGGCTACTTCTAATATGAAGAAC
CTGAAGGAACTAGAGAANCCCAACTTTTACATTCCCAGGTCCTCCTTCCACATGGGTAGGTATGGGCACTGGCAGTTATA
CGATGAAAGGTTTCAGACAAATGTATTCCAGATATAAAAACAGCCTCAAGTTCAACGATCACCTCAGGTGTTTGTTCTCT
GACATATGGCTTGTATTTATTAGTACTGTGAATGTTGTATTTGTGTTGTGTTGTGGAAAAATAATGACAATAATACCCTG
TATAGTGCTGCTTTACTCATCTTTTCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis