Browse Element(s) Details


Os.23377.1.A1_s_at

Description gb:CA759373
DB_XREF= gi:25803412
DB_XREF=BR060012A10A06.ab1
CLONE=BR060012A10A06.ab1
TID=Os.23377.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23377 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1686011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16820OsAffx.29241.1.S1_s_at11/118+10285855..10286478hypothetical protein
LOC_Os08g16830Os.6767.1.S1_at11/118+10287896..10288799expressed protein
LOC_Os08g16840Os.17340.1.S1_at11/118+10290580..10294388F-box domain containing protein, expressed
LOC_Os08g16850NANA8+10295098..10295376hypothetical protein
LOC_Os08g16860Os.23377.1.A1_s_at11/118+10310634..10314808F-box domain containing protein, expressed
LOC_Os08g16870OsAffx.29242.1.S1_at11/118+10319585..10321310hypothetical protein
LOC_Os08g16870OsAffx.10665.1.S1_x_at4/118+10319585..10321310hypothetical protein
LOC_Os08g16870OsAffx.10665.3.S1_x_at1/118+10319585..10321310hypothetical protein
LOC_Os08g16870OsAffx.10665.3.S1_at1/118+10319585..10321310hypothetical protein
LOC_Os08g16880Os.54002.1.S1_at9/118+10323088..10329097expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23377.1.A1_s_at--181--511Chr08:10313731..10313755 (25 bp)
ATCGAGTTGATTGCTCCCCTAAGAG
LOC_Os08g16860
Os.23377.1.A1_s_at--754--8131Chr08:10314187..10314211 (25 bp)
GGACAAGCCCAATGTTCGACAACTT
LOC_Os08g16860
Os.23377.1.A1_s_at--1054--2031Chr08:10314208..10314232 (25 bp)
ACTTAATAAGCCTGACTCTTGGTGA
LOC_Os08g16860
Os.23377.1.A1_s_at--157--7771Chr08:10314235..10314259 (25 bp)
GGTGCATGTCCAACGAATTCTCTCC
LOC_Os08g16860
Os.23377.1.A1_s_at--59--9671Chr08:10314282..10314306 (25 bp)
TCACCACTGCTAGAGGATCTCACTT
LOC_Os08g16860
Os.23377.1.A1_s_at--590--2871Chr08:10314405..10314429 (25 bp)
AAGTGTGCGAATATTGCCTCCAAGA
LOC_Os08g16860
Os.23377.1.A1_s_at--208--6451Chr08:10314484..10314508 (25 bp)
GATCACAATCTATTTCTGGTTAGGT
LOC_Os08g16860
Os.23377.1.A1_s_at--357--2251Chr08:10314524..10314548 (25 bp)
AAATTACTCACGTTGTTGGCTCCAA
LOC_Os08g16860
Os.23377.1.A1_s_at--1123--4771Chr08:10314542..10314566 (25 bp)
GCTCCAATCTGCAAATCCCTTGAGG
LOC_Os08g16860
Os.23377.1.A1_s_at--534--5391Chr08:10314642..10314666 (25 bp)
GAAGCGCATGGAGCATTGAATCTAC
LOC_Os08g16860
Os.23377.1.A1_s_at--572--6431Chr08:10314680..10314704 (25 bp)
GATCTTGCTGCAGTTACATCCAAAT
LOC_Os08g16860
Target Sequence 
ATCGAGTTGATTGCTCCCCTAAGAGAGGATAAATTTGAAATGGAAATTTGGACAAGCCCAATGTTCGACAACTTAATAAG
CCTGACTCTTGGTGAATGGTGCATGTCCAACGAATTCTCTCCCTTACTCCACTTCCTTTGGTACTCACCACTGCTAGAGG
ATCTCACTTTGAAGCTCAATATGGAAGTGTGCGAATATTGCCTCCAAGAGCCACCCACGGCACCCCCGCTGGTTAAAGAA
TTTACCACTGATTACCTTAAGAAGATCACAATCTATTTCTGGTTAGGTGATGAAAGGGTTAGTAAATTACTCACGTTGTT
GGCTCCAATCTGCAAATCCCTTGAGGATATTAAGCTCATACCATCAACACCACCTGGGGTAAGAGCATTCGTATCAAGGG
TGCAAAGAATTATAAAGTGATGAAGCGCATGGAGCATTGAATCTACCAAGCTCTCCCATGATCTTGCTGCAGTTACATCC
AAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23377.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis