Browse Element(s) Details


Os.54002.1.S1_at

Description gb:AK101221.1
DB_XREF= gi:32986430
TID=Os.54002.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031C23, full insert sequence.
FL= gb:AK101221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g168809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16860Os.23377.1.A1_s_at11/118+10310634..10314808F-box domain containing protein, expressed
LOC_Os08g16870OsAffx.29242.1.S1_at11/118+10319585..10321310hypothetical protein
LOC_Os08g16870OsAffx.10665.1.S1_x_at4/118+10319585..10321310hypothetical protein
LOC_Os08g16870OsAffx.10665.3.S1_x_at1/118+10319585..10321310hypothetical protein
LOC_Os08g16870OsAffx.10665.3.S1_at1/118+10319585..10321310hypothetical protein
LOC_Os08g16880Os.54002.1.S1_at9/118+10323088..10329097expressed protein
LOC_Os08g16900OsAffx.31892.1.S1_x_at3/118+10340152..10343697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g16900OsAffx.31892.5.S1_x_at3/118+10340152..10343697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g16910Os.7496.1.S1_a_at1/118+10349061..10352032mannitol dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54002.1.S1_at--408--5211Chr08:10326305..10326329 (25 bp)
GAATTCCTTGCAAAAGCAGCTCTGG
LOC_Os08g16880
Os.54002.1.S1_at--201--1591Chr08:10326322..10326346 (25 bp)
AGCTCTGGAGCTTAGTGGGCATAAT
LOC_Os08g16880
Os.54002.1.S1_at--521--1031Chr08:10326354..10326378 (25 bp)
AGGTGAAGGGCCCTATTAGGCTCCT
LOC_Os08g16880
Os.54002.1.S1_at--584--151Chr08:10326368..10326392 (25 bp)
ATTAGGCTCCTCTCTGATGAAGATG
LOC_Os08g16880
Os.54002.1.S1_at--926--5571Chr08:10328699..10328723 (25 bp)
GAAATACTAGCTGCCTACTTCAAAG
LOC_Os08g16880
Os.54002.1.S1_at--873--5951Chr08:10328857..10328881 (25 bp)
GAGCAATATTGTAGTCCTGTCTGAA
LOC_Os08g16880
Os.54002.1.S1_at--284--6771Chr08:10328916..10328940 (25 bp)
GTTAAAGCACTGACCCTCGAATGGC
LOC_Os08g16880
Os.54002.1.S1_at--439--1391Chr08:10328981..10329005 (25 bp)
AGACTGTTTAACATCGCCGTAGCGT
LOC_Os08g16880
Os.54002.1.S1_at--1091--531Chr08:10328993..10329017 (25 bp)
ATCGCCGTAGCGTGAATGTTGCCAA
LOC_Os08g16880
Os.54002.1.S1_at--1109--2311NONE
AAAGTAGTCTGCTTGTCCAGTTCGT
NONE
Os.54002.1.S1_at--676--7271NONE
GTCCAGTTCGTGTGAGTGCTTGTAT
NONE
Target Sequence 
GAATTCCTTGCAAAAGCAGCTCTGGAGCTTAGTGGGCATAATGATAGCAAGGTGAAGGGCCCTATTAGGCTCCTCTCTGA
TGAAGATGAGGACTAAGATTGTGTATTGTTGGTTTTATCCAGNGATGAAATACTAGCTGCCTACTTCAAAGAATGGATAA
AGTGCGGTATAACTTACTCTGCAATCAAGAAAATTTTGCTTAGTTGTGCTGTGGTGTACATACCAAGGCAGAATGAAGTA
GACAAGCTAGATGTAAACTGTAATAGTTATTATCTTTGCCTTGAGAGCAATATTGTAGTCCTGTCTGAATGTCATTTTCA
GAAGGAAATTTTGACTGTTTTTAGTTAAAGCACTGACCCTCGAATGGCAGTTGAGTCCATTGCTGAAGATTTGATCTAGT
GGTGTTTGAGACTGTTTAACATCGCCGTAGCGTGAATGTTGCCAAAGTAGTCTGCTTGTCCAGTTCGTGTGAGTGCTTGT
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis