Browse Element(s) Details


OsAffx.29242.1.S1_at

Description tigr:9636.m01698
TID=OsAffx.29242.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1687011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16850NANA8+10295098..10295376hypothetical protein
LOC_Os08g16860Os.23377.1.A1_s_at11/118+10310634..10314808F-box domain containing protein, expressed
LOC_Os08g16870OsAffx.29242.1.S1_at11/118+10319585..10321310hypothetical protein
LOC_Os08g16870OsAffx.10665.1.S1_x_at4/118+10319585..10321310hypothetical protein
LOC_Os08g16870OsAffx.10665.3.S1_x_at1/118+10319585..10321310hypothetical protein
LOC_Os08g16870OsAffx.10665.3.S1_at1/118+10319585..10321310hypothetical protein
LOC_Os08g16880Os.54002.1.S1_at9/118+10323088..10329097expressed protein
LOC_Os08g16900OsAffx.31892.1.S1_x_at3/118+10340152..10343697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g16900OsAffx.31892.5.S1_x_at3/118+10340152..10343697retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29242.1.S1_at--237--9811Chr08:10320477..10320731 (25 bp)
TAAAAAAGTGCCCAACAAGTCGATG
LOC_Os08g16870
OsAffx.29242.1.S1_at--234--2851Chr08:10320461..10320485 (25 bp)
AAGTCGATGGGCTCCGTGAGATCCT
LOC_Os08g16870
OsAffx.29242.1.S1_at--352--7371Chr08:10320446..10320470 (25 bp)
GTGAGATCCTTGCTCCACGACTCAC
LOC_Os08g16870
OsAffx.29242.1.S1_at--815--1851Chr08:10320430..10320454 (25 bp)
ACGACTCACGCGCTAGCACGTGCAG
LOC_Os08g16870
OsAffx.29242.1.S1_at--282--5751Chr08:10320114..10320395 (25 bp)
GACGGCAGAGAGGTCCATGCAATTG
LOC_Os08g16870
OsAffx.29242.1.S1_at--12--3191Chr08:10320095..10320119 (25 bp)
CAATTGGATTGGGACTCACTAGAGA
LOC_Os08g16870
OsAffx.29242.1.S1_at--138--8591Chr08:10319942..10319966 (25 bp)
TGGTTTGGCTTGCAACAGTCCACTG
LOC_Os08g16870
OsAffx.29242.1.S1_at--1017--9211Chr08:10319924..10319948 (25 bp)
TCCACTGCAGCCAAAACGACAACGA
LOC_Os08g16870
OsAffx.29242.1.S1_at--688--1851Chr08:10319909..10319933 (25 bp)
ACGACAACGATGTCAAGGCGGCGAC
LOC_Os08g16870
OsAffx.29242.1.S1_at--492--9391Chr08:10319839..10319863 (25 bp)
TCGATCCGCTACACGAGAGGATGGA
LOC_Os08g16870
OsAffx.29242.1.S1_at--926--6151Chr08:10319686..10319710 (25 bp)
GAGGTTGAGGGCATCCTCTCTCGGT
LOC_Os08g16870
Target Sequence 
TAAAAAAGTGCCCAACAAGTCGATGGGCTCCGTGAGATCCTTGCTCCACGACTCACGCGCTAGCACGTGCAGCCTCGCCA
GGAAGATCGCCAACGCCGTCACCATGGACGGCAGAGAGGTCCATGCAATTGGATTGGGACTCACTAGAGAGGGAGAAATC
AAAGATGGAGCTCGGCGGCCGGTTGTAGAAGATGATGCTGATCTCCAAGATCATTGCGCCATTGGATGGGGTACTTGGGG
GTATATGGAGAGAGGTCAACATGAAGCTGATGGCGTGGTGGTTTGGCTTGCAACAGTCCACTGCAGCCAAAACGACAACG
ATGTCAAGGCGGCGACGCGCAGAGTGCGCTCCAAGGCCGGCGATGACACGTGGCGTTCCCGTCGATCCGCTACACGAGAG
GATGGAATCAAAAGGAAAATCTTCGGCATGATAAGATTTGAGGGCGACGAAGAGGTTGAGGGCATCCTCTCTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis