Browse Element(s) Details

OsAffx.1579.1.S1_x_at

Description

gb:NM_185428.1
DB_XREF= gi:34897941
TID=OsAffx.1579.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02470	7/11	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02460	2/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02400	Os.44826.1.S1_at	5/11	6	+	824557..828064	F-box domain containing protein
LOC_Os06g02410	OsAffx.30517.2.A1_at	11/11	6	+	827718..829762	expressed protein
LOC_Os06g02410	Os.4509.1.S1_x_at	10/11	6	+	827718..829762	expressed protein
LOC_Os06g02420	Os.4510.1.S1_at	6/11	6	+	831842..833940	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02430	Os.15602.1.S1_x_at	11/11	6	+	834630..838033	expressed protein
LOC_Os06g02430	Os.15602.1.S1_at	10/11	6	+	834630..838033	expressed protein
LOC_Os06g02440	Os.4513.1.S1_at	11/11	6	+	840323..843186	expressed protein
LOC_Os06g02450	Os.53204.1.S1_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02450	OsAffx.10364.1.S1_x_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02460	Os.55439.1.S1_at	11/11	6	+	849898..851193	expressed protein
LOC_Os06g02460	OsAffx.1579.1.S1_x_at	2/11	6	+	849898..851193	expressed protein
LOC_Os06g02470	Os.4516.1.S1_a_at	11/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_at	9/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_x_at	7/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02480	Os.48019.1.S1_at	4/11	6	+	854756..856968	hypothetical protein
LOC_Os06g02490	Os.4518.1.S1_a_at	11/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02490	Os.4518.2.S1_x_at	9/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02500	Os.20570.1.S1_x_at	11/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02500	Os.20570.2.S1_at	10/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02510	Os.12590.1.S1_at	11/11	6	+	866370..868825	60S ribosomal protein L13-2, putative, expressed
LOC_Os06g02520	OsAffx.27422.1.S1_at	11/11	6	+	870781..873942	expressed protein
LOC_Os06g02530	Os.9159.2.S1_x_at	11/11	6	+	874377..875368	expressed protein
LOC_Os06g02540	Os.12752.3.S1_x_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02540	Os.12752.1.S1_a_at	11/11	6	+	875862..879529	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0000302	biological_process	response to reactive oxygen species
GO:0006950	biological_process	response to stress
GO:0009618	biological_process	response to pathogenic bacteria
GO:0010193	biological_process	response to ozone
GO:0005739	cellular_component	mitochondrion

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.1579.1.S1_x_at--450--789	1	Chr06:850241..850265 (25 bp)	GGTTCTTTGCCCTGGTGGCGCACTT	LOC_Os06g02460
OsAffx.1579.1.S1_x_at--870--465	1	Chr06:850342..850366 (25 bp)	GCGTCCGGCTACAAGCACATGCTGG	LOC_Os06g02460
OsAffx.1579.1.S1_x_at--306--273	1	NONE	AAGCACATGCTGGAACGCGTCTCCT	NONE
OsAffx.1579.1.S1_x_at--889--149	1	NONE	AGCACATGCTGGAACGCGTCTCCTC	NONE
OsAffx.1579.1.S1_x_at--575--299	1	Chr06:851517..851541 (25 bp)	AATCCGATCCGAACCAAGGTACGTG	LOC_Os06g02470
OsAffx.1579.1.S1_x_at--501--637	1	Chr06:851522..851546 (25 bp)	GATCCGAACCAAGGTACGTGCTCGC	LOC_Os06g02470
OsAffx.1579.1.S1_x_at--661--421	1	Chr06:851525..851549 (25 bp)	CCGAACCAAGGTACGTGCTCGCCGA	LOC_Os06g02470
OsAffx.1579.1.S1_x_at--75--1003	1	Chr06:851562..851586 (25 bp)	TAGACCTAGGGCTCCCAGATCTCTC	LOC_Os06g02470
OsAffx.1579.1.S1_x_at--20--1009	1	Chr06:851568..851592 (25 bp)	TAGGGCTCCCAGATCTCTCGCGGAT	LOC_Os06g02470
OsAffx.1579.1.S1_x_at--226--933	1	Chr06:851585..851609 (25 bp)	TCGCGGATCTGCTCTCTCCGTTCAT	LOC_Os06g02470
OsAffx.1579.1.S1_x_at--385--929	1	Chr06:851601..851625 (25 bp)	TCCGTTCATCTCCTCCATGGTGCTG	LOC_Os06g02470

Target Sequence

GGTTCTTTGCCCTGGTGGCGCACTTCGCCGGCGCGTACACCGCCGCCGTCCTCTCCGAGCTGGTCCCCGTCGTGGTCGCC
GCCGCCGGCGGGGTCTGCGCCGCGTCCGGCTACAAGCACATGCTGGAACGCGTCTCCTCTCCTCTCTTCTCTTCTCTCTC
CGGCGGCGGCGGCGGCGGAATCCGATCCGAACCAAGGTACGTGCTCGCCGACCCCCGCCCCCCTAGACCTAGGGCTCCCA
GATCTCTCGCGGATCTGCTCTCTCCGTTCATCTCCTCCATGGTGCTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis