Browse Element(s) Details

OsAffx.27422.1.S1_at

Description

tigr:9634.m00157
TID=OsAffx.27422.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02520	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02450	Os.53204.1.S1_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02450	OsAffx.10364.1.S1_x_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02460	Os.55439.1.S1_at	11/11	6	+	849898..851193	expressed protein
LOC_Os06g02460	OsAffx.1579.1.S1_x_at	2/11	6	+	849898..851193	expressed protein
LOC_Os06g02470	Os.4516.1.S1_a_at	11/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_at	9/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_x_at	7/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02480	Os.48019.1.S1_at	4/11	6	+	854756..856968	hypothetical protein
LOC_Os06g02490	Os.4518.1.S1_a_at	11/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02490	Os.4518.2.S1_x_at	9/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02500	Os.20570.1.S1_x_at	11/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02500	Os.20570.2.S1_at	10/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02510	Os.12590.1.S1_at	11/11	6	+	866370..868825	60S ribosomal protein L13-2, putative, expressed
LOC_Os06g02520	OsAffx.27422.1.S1_at	11/11	6	+	870781..873942	expressed protein
LOC_Os06g02530	Os.9159.2.S1_x_at	11/11	6	+	874377..875368	expressed protein
LOC_Os06g02540	Os.12752.3.S1_x_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02540	Os.12752.1.S1_a_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02550	Os.7910.1.S1_at	11/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02550	Os.44823.1.S1_x_at	10/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02560	Os.32618.1.S1_at	11/11	6	+	892175..895357	growth-regulating factor, putative, expressed
LOC_Os06g02560	OsAffx.29241.1.S1_s_at	1/11	6	+	892175..895357	growth-regulating factor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27422.1.S1_at--766--1039	1	Chr06:872639..872663 (25 bp)	TTGTTGCTCCTGCAAACCAGGTTTG	LOC_Os06g02520
OsAffx.27422.1.S1_at--614--687	1	Chr06:872659..872683 (25 bp)	GTTTGGCTTGGTACAGCATCTCGAG	LOC_Os06g02520
OsAffx.27422.1.S1_at--646--407	1	Chr06:872680..872704 (25 bp)	CGAGAGCCTTCGCAGAGTGGATCAT	LOC_Os06g02520
OsAffx.27422.1.S1_at--1133--109	1	Chr06:872695..872719 (25 bp)	AGTGGATCATCTACTGCTATCCCAG	LOC_Os06g02520
OsAffx.27422.1.S1_at--668--1073	1	Chr06:872735..872759 (25 bp)	TTGAAGTTTGTGATGACCTGCCTCC	LOC_Os06g02520
OsAffx.27422.1.S1_at--60--587	1	Chr06:873129..873153 (25 bp)	GAGCCTAACTCGAATGGGATCCATT	LOC_Os06g02520
OsAffx.27422.1.S1_at--17--261	1	Chr06:873392..873416 (25 bp)	AACGCAGGGTTGAGCGCTCACGCAA	LOC_Os06g02520
OsAffx.27422.1.S1_at--575--565	1	Chr06:873638..873662 (25 bp)	GACATACAGGTTGTGCTTAAGCGCT	LOC_Os06g02520
OsAffx.27422.1.S1_at--840--1049	1	Chr06:873654..873678 (25 bp)	TTAAGCGCTGCGAAACTCTAGAGAA	LOC_Os06g02520
OsAffx.27422.1.S1_at--373--131	1	Chr06:873679..873703 (25 bp)	AGAGGTCCGGTCACTGAAGCTTAAC	LOC_Os06g02520
OsAffx.27422.1.S1_at--197--979	1	Chr06:873700..873721 (22 bp)	TAACCTCTCCTTCATGAACCGGAAA	LOC_Os06g02520

Target Sequence

TTGTTGCTCCTGCAAACCAGGTTTGGCTTGGTACAGCATCTCGAGAGCCTTCGCAGAGTGGATCATCTACTGCTATCCCA
GCACCTTCAGCTGGATTTGAAGTTTGTGATGACCTGCCTCCCATTGGGCAAGCAATGACTGTTTGTGAGAGTACTAGAAC
AAATGCTGCAAATGGCAATGGGACAGCTGACTGTAGATCAAAAGGCAAAGATTTCAGAGAGAGAATACTAAAAGAAAATT
TGAAGGATGACAGAAAGAAAGGGAGCCTAACTCGAATGGGATCCATTTCATCTGAACAAGCAGATAAAGGAGATCCTACA
AAGAAACGCAGGGTTGAGCGCTCACGCAAGATGGCAGAAGCAAAGGAAAGAAGCTCAACACCAGTAATACCATCTGACAT
ACAGGTTGTGCTTAAGCGCTGCGAAACTCTAGAGAAAGAGGTCCGGTCACTGAAGCTTAACCTCTCCTTCATGAACCGGA
AA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis