Browse Element(s) Details

Os.20570.1.S1_x_at

Description

gb:AK112038.1
DB_XREF= gi:37988701
TID=Os.20570.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Zantedeschia aethiopica iron superoxide dismutase (AF094831) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-G06, full insert sequence.
FL= gb:AK112038.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02500	11/11	Superoxide dismutase, chloroplast, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02440	Os.4513.1.S1_at	11/11	6	+	840323..843186	expressed protein
LOC_Os06g02450	Os.53204.1.S1_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02450	OsAffx.10364.1.S1_x_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02460	Os.55439.1.S1_at	11/11	6	+	849898..851193	expressed protein
LOC_Os06g02460	OsAffx.1579.1.S1_x_at	2/11	6	+	849898..851193	expressed protein
LOC_Os06g02470	Os.4516.1.S1_a_at	11/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_at	9/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_x_at	7/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02480	Os.48019.1.S1_at	4/11	6	+	854756..856968	hypothetical protein
LOC_Os06g02490	Os.4518.1.S1_a_at	11/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02490	Os.4518.2.S1_x_at	9/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02500	Os.20570.1.S1_x_at	11/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02500	Os.20570.2.S1_at	10/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02510	Os.12590.1.S1_at	11/11	6	+	866370..868825	60S ribosomal protein L13-2, putative, expressed
LOC_Os06g02520	OsAffx.27422.1.S1_at	11/11	6	+	870781..873942	expressed protein
LOC_Os06g02530	Os.9159.2.S1_x_at	11/11	6	+	874377..875368	expressed protein
LOC_Os06g02540	Os.12752.3.S1_x_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02540	Os.12752.1.S1_a_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02550	Os.7910.1.S1_at	11/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02550	Os.44823.1.S1_x_at	10/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0007623	biological_process	circadian rhythm
GO:0009411	biological_process	response to UV
GO:0019430	biological_process	removal of superoxide radicals
GO:0046688	biological_process	response to copper ion
GO:0005739	cellular_component	mitochondrion
GO:0009507	cellular_component	chloroplast
GO:0008382	molecular_function	iron superoxide dismutase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.20570.1.S1_x_at--132--819	1	Chr06:863891..863915 (25 bp)	GGAAGCAACTTTTAGCTCGGGCAAA	LOC_Os06g02500
Os.20570.1.S1_x_at--769--965	1	Chr06:863858..863882 (25 bp)	TCAGAGCTATGCCTCAGCAGGTCAA	LOC_Os06g02500
Os.20570.1.S1_x_at--211--749	1	Chr06:863755..863779 (25 bp)	GTGGGTCATGTTGCCGAGTTGAACC	LOC_Os06g02500
Os.20570.1.S1_x_at--1077--593	1	Chr06:863697..863721 (25 bp)	GAGCAGCTGATCAATCTTCAAGGTA	LOC_Os06g02500
Os.20570.1.S1_x_at--805--31	1	Chr06:863648..863672 (25 bp)	ATACTGTGGGCAACCCTTTGCTTAA	LOC_Os06g02500
Os.20570.1.S1_x_at--14--73	1	Chr06:863617..863641 (25 bp)	ATGTTGTCGTACAGGCAGCTTCACA	LOC_Os06g02500
Os.20570.1.S1_x_at--693--331	1	Chr06:863596..863620 (25 bp)	CACAGTTTCTGTCGCTGTCGATGAA	LOC_Os06g02500
Os.20570.1.S1_x_at--968--127	1	Chr06:863570..863594 (25 bp)	AGATCTGTAGTTCGTGACACTGCAG	LOC_Os06g02500
Os.20570.1.S1_x_at--826--237	1	Chr06:863531..863555 (25 bp)	AAACCCAGAGTCATGTGCGAGCTAA	LOC_Os06g02500
Os.20570.1.S1_x_at--715--69	1	Chr06:863441..863465 (25 bp)	ATGAGCCTGACATCTTGTATTCCTG	LOC_Os06g02500
Os.20570.1.S1_x_at--575--731	1	Chr06:863417..863441 (25 bp)	GTGCTGTCCATGTTTGAATCCTGAA	LOC_Os06g02500

Target Sequence

GGAAGCAACTTTTAGCTCGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCAGGTCAATGGGGATGCAAGAGAGCAGACC
AGCGGTCAAGAGAAGTCCCTAGGGGTGTGACAACGGAGCCAAGTAAGCTACGGCAGGTGGGTCATGTTGCCGAGTTGAAC
CATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATTCGAAGATTGTATG
CACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAA
TAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTA
ATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTG
TCCATGTTTGAATCCTGAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis