Browse Element(s) Details

Os.12752.1.S1_a_at

Description

gb:AK062240.1
DB_XREF= gi:32972258
TID=Os.12752.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU068433(C30250),AU075373(E2906),AU093781(E0291), AU068434(C30250)~similar to Oryza sativa chromosome 7, OJ1714_H10.10~unknown protein (OSJNBa0019F11.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E07, full insert sequence.
FL= gb:AK062240.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02540	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02460	Os.55439.1.S1_at	11/11	6	+	849898..851193	expressed protein
LOC_Os06g02460	OsAffx.1579.1.S1_x_at	2/11	6	+	849898..851193	expressed protein
LOC_Os06g02470	Os.4516.1.S1_a_at	11/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_at	9/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_x_at	7/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02480	Os.48019.1.S1_at	4/11	6	+	854756..856968	hypothetical protein
LOC_Os06g02490	Os.4518.1.S1_a_at	11/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02490	Os.4518.2.S1_x_at	9/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02500	Os.20570.1.S1_x_at	11/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02500	Os.20570.2.S1_at	10/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02510	Os.12590.1.S1_at	11/11	6	+	866370..868825	60S ribosomal protein L13-2, putative, expressed
LOC_Os06g02520	OsAffx.27422.1.S1_at	11/11	6	+	870781..873942	expressed protein
LOC_Os06g02530	Os.9159.2.S1_x_at	11/11	6	+	874377..875368	expressed protein
LOC_Os06g02540	Os.12752.3.S1_x_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02540	Os.12752.1.S1_a_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02550	Os.7910.1.S1_at	11/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02550	Os.44823.1.S1_x_at	10/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02560	Os.32618.1.S1_at	11/11	6	+	892175..895357	growth-regulating factor, putative, expressed
LOC_Os06g02560	OsAffx.29241.1.S1_s_at	1/11	6	+	892175..895357	growth-regulating factor, putative, expressed
LOC_Os06g02570	Os.8343.1.S1_at	11/11	6	+	901675..906047	Syntaxin 43, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12752.1.S1_a_at--565--351	1	Chr06:876201..876225 (25 bp)	CATGTGTTTCTGATTGCTCACTGAT	LOC_Os06g02540
Os.12752.1.S1_a_at--1074--683	1	Chr06:876196..876220 (25 bp)	GTTTCTGATTGCTCACTGATTGGAA	LOC_Os06g02540
Os.12752.1.S1_a_at--784--225	1	Chr06:876172..876196 (25 bp)	AAATTTGTATCTACCAGTATCCCTG	LOC_Os06g02540
Os.12752.1.S1_a_at--40--691	1	Chr06:876166..876190 (25 bp)	GTATCTACCAGTATCCCTGGAGAGT	LOC_Os06g02540
Os.12752.1.S1_a_at--931--419	1	Chr06:876152..876176 (25 bp)	CCCTGGAGAGTGGAGAGTTGATATT	LOC_Os06g02540
Os.12752.1.S1_a_at--671--75	1	Chr06:876108..876132 (25 bp)	ATGTAATTGCCTTTGCTTGTCCCTC	LOC_Os06g02540
Os.12752.1.S1_a_at--712--1071	1	Chr06:876096..876120 (25 bp)	TTGCTTGTCCCTCAGAAGTATTCGT	LOC_Os06g02540
Os.12752.1.S1_a_at--83--725	1	Chr06:876090..876114 (25 bp)	GTCCCTCAGAAGTATTCGTTTGTTT	LOC_Os06g02540
Os.12752.1.S1_a_at--246--611	1	Chr06:876042..876066 (25 bp)	GAGTGCTACTATATACACGATCATT	LOC_Os06g02540
Os.12752.1.S1_a_at--1042--1017	1	Chr06:876031..876055 (25 bp)	TATACACGATCATTCTGTTGTTAAG	LOC_Os06g02540
Os.12752.1.S1_a_at--1157--1033	1	Chr06:875951..875975 (25 bp)	TTTATCAATCGTCATTATACTGTGT	LOC_Os06g02540

Target Sequence

CATGTGTTTCTGATTGCTCACTGATTGGAAAATTTGTATCTACCAGTATCCCTGGAGAGTGGAGAGTTGATATTGAGTCT
ATTTTATCTTGTGATGTAATTGCCTTTGCTTGTCCCTCAGAAGTATTCGTTTGTTTGTGGGGTGAGACAAGTGGAATAAG
AGTGCTACTATATACACGATCATTCTGTTGTTAAGTTTGCCAGTTCTGCAGTTCATGTATCTGTAATTTGATGATGCTGG
ATTTCTACTATTTATCAATCGTCATTATACTGTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis