Browse Element(s) Details


Os.32618.1.S1_at

Description gb:AK103508.1
DB_XREF= gi:32988717
TID=Os.32618.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative growth-regulating factor 1 (OSJNBa0019F11.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131E19, full insert sequence.
FL= gb:AK103508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0256011/11growth-regulating factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02510Os.12590.1.S1_at11/116+866370..86882560S ribosomal protein L13-2, putative, expressed
LOC_Os06g02520OsAffx.27422.1.S1_at11/116+870781..873942expressed protein
LOC_Os06g02530Os.9159.2.S1_x_at11/116+874377..875368expressed protein
LOC_Os06g02540Os.12752.3.S1_x_at11/116+875862..879529expressed protein
LOC_Os06g02540Os.12752.1.S1_a_at11/116+875862..879529expressed protein
LOC_Os06g02550Os.7910.1.S1_at11/116+884835..891704Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02550Os.44823.1.S1_x_at10/116+884835..891704Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02560Os.32618.1.S1_at11/116+892175..895357growth-regulating factor, putative, expressed
LOC_Os06g02560OsAffx.29241.1.S1_s_at1/116+892175..895357growth-regulating factor, putative, expressed
LOC_Os06g02570Os.8343.1.S1_at11/116+901675..906047Syntaxin 43, putative, expressed
LOC_Os06g02580Os.32113.1.S1_at11/116+907638..909323high-affinity nickel-transport family protein, putative, expressed
LOC_Os06g02590Os.52636.1.S1_at4/116+912780..920283START domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32618.1.S1_at--257--951Chr06:892840..892864 (25 bp)
AGGAACTTGGCCAGGTCACCATCGC
LOC_Os06g02560
Os.32618.1.S1_at--960--7351Chr06:892751..892775 (25 bp)
GTGAAGCACGAGAACCAGCCGCTGA
LOC_Os06g02560
Os.32618.1.S1_at--307--4311Chr06:892724..892748 (25 bp)
CCTTTCTTCGATGAGTGGCCTGGGA
LOC_Os06g02560
Os.32618.1.S1_at--566--4131Chr06:892469..892493 (25 bp)
CGCATTTTACCGCTGCTAGTGAGTT
LOC_Os06g02560
Os.32618.1.S1_at--515--1251Chr06:892448..892472 (25 bp)
AGTTGGATCAGTGATTGCGCCTCCC
LOC_Os06g02560
Os.32618.1.S1_at--81--10571Chr06:892419..892443 (25 bp)
TTCTTTGTTCAATTGTATCGTGCTA
LOC_Os06g02560
Os.32618.1.S1_at--172--6591Chr06:892318..892342 (25 bp)
GATTCCACGATGTTTTGTACCTGCA
LOC_Os06g02560
Os.32618.1.S1_at--698--8331Chr06:892279..892303 (25 bp)
GGCTGCTGGAAGTTACTGGCTGTCT
LOC_Os06g02560
Os.32618.1.S1_at--877--3911Chr06:892264..892288 (25 bp)
CTGGCTGTCTGTAATGTTTGTAGTA
LOC_Os06g02560
Os.32618.1.S1_at--1102--6891Chr06:892219..892243 (25 bp)
GTATCTATCTACTTGTTCCGAATTG
LOC_Os06g02560
Os.32618.1.S1_at--990--351Chr06:892179..892203 (25 bp)
ATAATCTGGCATGTGCCAACGTCCT
LOC_Os06g02560
Target Sequence 
AGGAACTTGGCCAGGTCACCATCGCCTCGCTGTCCCAAGAGCAGGAGCGCCGCTCTTTTGGTGGTGGAGCGGGGGGGATG
CTAGGAAATGTGAAGCACGAGAACCAGCCGCTGAGGCCTTTCTTCGATGAGTGGCCTGGGAGGCGAGACTCGTGGTCGGA
GATGGATGAGGAGAGGTCCAACCAGACCTCCTTCTCGACAACCCAGCTCTCGATCTCCATCCCGATGCCCAGATGTGNNT
NNNNNNTNNGNNNNNNNNNNCNNNGNGGTGGACCTCTACCCCGCATTTTACCGCTGCTAGTGAGTTGGATCAGTGATTGC
GCCTCCCCTGGTTCTTTGTTCAATTGTATCGTGCTATGAACTAGTTAAGAGAACCCTACTTTTTTTTTCTAGTAGAAGAG
ACAGAAAACTCTTATCCATCATCATGTTTTAAGATTCCACGATGTTTTGTACCTGCAACCCACGACCTGCCGGCTGCTGG
AAGTTACTGGCTGTCTGTAATGTTTGTAGTAGATGATCTATGATGTATCATGTATCTATCTACTTGTTCCGAATTGCGGA
AACCAAAGCCGATAATCTGGCATGTGCCAACGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis