Browse Element(s) Details


Os.32113.1.S1_at

Description gb:AK105979.1
DB_XREF= gi:32991188
TID=Os.32113.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 2, At2g16800 (OSJNBa0019F11.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F10, full insert sequence.
FL= gb:AK105979.1 gb:AK058327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0258011/11high-affinity nickel-transport family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02550Os.7910.1.S1_at11/116+884835..891704Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02550Os.44823.1.S1_x_at10/116+884835..891704Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02560Os.32618.1.S1_at11/116+892175..895357growth-regulating factor, putative, expressed
LOC_Os06g02560OsAffx.29241.1.S1_s_at1/116+892175..895357growth-regulating factor, putative, expressed
LOC_Os06g02570Os.8343.1.S1_at11/116+901675..906047Syntaxin 43, putative, expressed
LOC_Os06g02580Os.32113.1.S1_at11/116+907638..909323high-affinity nickel-transport family protein, putative, expressed
LOC_Os06g02590Os.52636.1.S1_at4/116+912780..920283START domain-containing protein, putative, expressed
LOC_Os06g02600Os.5273.2.S1_x_at10/116+921217..924267DAG protein, chloroplast precursor, putative, expressed
LOC_Os06g02610OsAffx.27445.2.S1_x_at11/116+924433..925154hypothetical protein
LOC_Os06g02610OsAffx.27445.1.S1_x_at4/116+924433..925154hypothetical protein
LOC_Os06g02620Os.44821.1.A1_x_at10/116+926340..931584DnaJ C terminal region family protein, expressed
LOC_Os06g02620Os.7738.1.S1_at8/116+926340..931584DnaJ C terminal region family protein, expressed
LOC_Os06g02630Os.32596.1.S1_x_at11/116+932239..935006expressed protein
LOC_Os06g02630OsAffx.27427.1.S1_at1/116+932239..935006expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015675biological_processnickel ion transport
GO:0016021cellular_componentintegral to membrane
GO:0015099molecular_functionnickel ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32113.1.S1_at--1152--6331Chr06:908300..908324 (25 bp)
GATGCTCTACCAGCCACCAGGAAGA
LOC_Os06g02580
Os.32113.1.S1_at--582--8191Chr06:908281..908305 (25 bp)
GGAAGAAGATCACCTTCGCCACGTT
LOC_Os06g02580
Os.32113.1.S1_at--348--8371Chr06:908169..908193 (25 bp)
GGCGTTCCTTGGCATGTTCCTCGTC
LOC_Os06g02580
Os.32113.1.S1_at--352--9451Chr06:908107..908131 (25 bp)
TCGGCTCTTGTACGGAGGCGCTCAA
LOC_Os06g02580
Os.32113.1.S1_at--679--9731Chr06:908086..908110 (25 bp)
TCAAGGAGAGGGTTCCCAGGATCAC
LOC_Os06g02580
Os.32113.1.S1_at--570--5971Chr06:908060..908084 (25 bp)
GAGAAGCTGACATGGGCTGCCTCGC
LOC_Os06g02580
Os.32113.1.S1_at--273--9611Chr06:908005..908029 (25 bp)
TCATCAGCCAGTCTCTCGGCTTTAG
LOC_Os06g02580
Os.32113.1.S1_at--451--4891Chr06:907987..908011 (25 bp)
GCTTTAGCTTGTACTGATCCGCCAT
LOC_Os06g02580
Os.32113.1.S1_at--1108--10531Chr06:907940..907964 (25 bp)
TTCTTCGCCATTGTTAAGCTTCCAC
LOC_Os06g02580
Os.32113.1.S1_at--344--9171Chr06:907915..907939 (25 bp)
TGCCTCCACTGTAGGAATCTGCCAT
LOC_Os06g02580
Os.32113.1.S1_at--645--5131Chr06:907881..907905 (25 bp)
GCAAATGTTGCTTGTTGAGATCCAG
LOC_Os06g02580
Target Sequence 
GATGCTCTACCAGCCACCAGGAAGAAGATCACCTTCGCCACGTTCGCCACCGGGATCGTGCACGGGCTGCAGCCCGNCGC
GCTCATGATGGTCCTGCCGGCGCTCGCCCTCCCGTCGCGCGTCGCCGGCGCGGCGTTCCTTGGCATGTTCCTCGTCGGCA
CCGTGGTCGCCATGGGCAGCTACACCGTCCTGNTCGGCTCTTGTACGGAGGCGCTCAAGGAGAGGGTTCCCAGGATCACG
GAGAAGCTGACATGGGCTGCCTCGCTCGTGGCCATCTCCATGGGCCTCGGCATCCTCATCAGCCAGTCTCTCGGCTTTAG
CTTGTACTGATCCGCCATCCCTCGCGACACCTCCTTCTTCTTCTTCGCCATTGTTAAGCTTCCACTGCCTCCACTGTAGG
AATCTGCCATGAGAATTTTGCAAATGTTGCTTGTTGAGATCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis