Browse Element(s) Details

Os.5273.2.S1_x_at

Description

gb:CR278699
DB_XREF= gi:44665265
DB_XREF=CR278699
CLONE=p850b05p3
TID=Os.5273.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative plastid protein (OSJNBa0019F11.23), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02600	10/11	DAG protein, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02570	Os.8343.1.S1_at	11/11	6	+	901675..906047	Syntaxin 43, putative, expressed
LOC_Os06g02580	Os.32113.1.S1_at	11/11	6	+	907638..909323	high-affinity nickel-transport family protein, putative, expressed
LOC_Os06g02590	Os.52636.1.S1_at	4/11	6	+	912780..920283	START domain-containing protein, putative, expressed
LOC_Os06g02600	Os.5273.2.S1_x_at	10/11	6	+	921217..924267	DAG protein, chloroplast precursor, putative, expressed
LOC_Os06g02610	OsAffx.27445.2.S1_x_at	11/11	6	+	924433..925154	hypothetical protein
LOC_Os06g02610	OsAffx.27445.1.S1_x_at	4/11	6	+	924433..925154	hypothetical protein
LOC_Os06g02620	Os.44821.1.A1_x_at	10/11	6	+	926340..931584	DnaJ C terminal region family protein, expressed
LOC_Os06g02620	Os.7738.1.S1_at	8/11	6	+	926340..931584	DnaJ C terminal region family protein, expressed
LOC_Os06g02630	Os.32596.1.S1_x_at	11/11	6	+	932239..935006	expressed protein
LOC_Os06g02630	OsAffx.27427.1.S1_at	1/11	6	+	932239..935006	expressed protein
LOC_Os06g02640	OsAffx.27423.1.S1_at	11/11	6	+	936167..939109	hypothetical protein
LOC_Os06g02650	Os.39915.1.A1_s_at	11/11	6	+	940733..945388	expressed protein
LOC_Os06g02650	OsAffx.8785.1.S1_at	2/11	6	+	940733..945388	expressed protein
LOC_Os06g02650	Os.32597.1.S1_x_at	1/11	6	+	940733..945388	expressed protein
LOC_Os06g02660	OsAffx.27424.1.S1_at	11/11	6	+	946958..948607	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0005739	cellular_component	mitochondrion

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5273.2.S1_x_at--628--127	1	Chr06:921803..921827 (25 bp)	AGATACTTTGGTTTCGGGTGCGAGA	LOC_Os06g02600
Os.5273.2.S1_x_at--417--985	1	NONE	TACAAGGACTATGGAGCTGAGCTCT	NONE
Os.5273.2.S1_x_at--54--135	1	Chr06:923834..923858 (25 bp)	AGAGATTGTTCAGAGGTCCCCGGAG	LOC_Os06g02600
Os.5273.2.S1_x_at--665--785	1	Chr06:923870..923894 (25 bp)	GGTAGAACCTGTCCCACAAAGAGCA	LOC_Os06g02600
Os.5273.2.S1_x_at--591--703	1	Chr06:923909..923933 (25 bp)	GTACAATGACAGGACCCGATACGCC	LOC_Os06g02600
Os.5273.2.S1_x_at--212--1077	1	Chr06:923999..924023 (25 bp)	TTGAGGCCTTACTAGCATATGCTGA	LOC_Os06g02600
Os.5273.2.S1_x_at--808--723	1	Chr06:924057..924081 (25 bp)	GTCGCTGGTATTGCTATTTTTCATG	LOC_Os06g02600
Os.5273.2.S1_x_at--256--473	1	Chr06:924081..924105 (25 bp)	GCTGGTGATTCTCACATCTTTGGAT	LOC_Os06g02600
Os.5273.2.S1_x_at--63--495	1	Chr06:924156..924180 (25 bp)	GCATTGCTGCTGCTGAACTCTTCGG	LOC_Os06g02600
Os.5273.2.S1_x_at--413--443	1	Chr06:924180..924204 (25 bp)	GCCATGTGCACACTTGTAAATCAGT	LOC_Os06g02600
Os.5273.2.S1_x_at--596--965	1	Chr06:924200..924224 (25 bp)	TCAGTTAGATGATTTTCACAGCGAG	LOC_Os06g02600

Target Sequence

AGATACTTTGGTTTCGGGTGCGAGATCGATGAGGAGACGTCCAACAAGCTGGAAGGGNCTTCCTGGTGTTCTGTTTGTCC
TCCCTGATTCCTATGTNGACCCTGAGTACAAGGACTATGGAGCTGAGCTCTTCGTCAATGGAGAGATTGTTCAGAGGTCC
CCGGAGAGGCAGAGGCGGGTAGAACCTGTCCCACAAAGAGCATCAGATAGGCCTAGGTACAATGACAGGACCCGATACGC
CCGGAGGAGGGAGAACCAACGGTGATCTGATTATCAGAAGCCAAATAACAAAGCCGCCTGGGTGGCTTGAGGCCTTACTA
GCATATGCTGAATGGAACAATCTAAAAATTGCTTTAATAGTTTTGTCGCTGGTATTGCTATTTTTCATGCTGGTGATTCT
CACATCTTTGGATGTATCGCATTCTGTAATTACTGGNAAACTTGAAAGNACCTGGCTTGGAATGCATTGCTGCTGCTGAA
CTCTTCGGCCATGTGCACACTTGTAAATCAGTTAGATGATTTTCACAGCGAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis