Browse Element(s) Details


Os.7738.1.S1_at

Description gb:AK058985.1
DB_XREF= gi:32969003
TID=Os.7738.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7738 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-E06, full insert sequence.
FL= gb:AK058985.1 gb:AK120746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g026208/11DnaJ C terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02570Os.8343.1.S1_at11/116+901675..906047Syntaxin 43, putative, expressed
LOC_Os06g02580Os.32113.1.S1_at11/116+907638..909323high-affinity nickel-transport family protein, putative, expressed
LOC_Os06g02590Os.52636.1.S1_at4/116+912780..920283START domain-containing protein, putative, expressed
LOC_Os06g02600Os.5273.2.S1_x_at10/116+921217..924267DAG protein, chloroplast precursor, putative, expressed
LOC_Os06g02610OsAffx.27445.2.S1_x_at11/116+924433..925154hypothetical protein
LOC_Os06g02610OsAffx.27445.1.S1_x_at4/116+924433..925154hypothetical protein
LOC_Os06g02620Os.44821.1.A1_x_at10/116+926340..931584DnaJ C terminal region family protein, expressed
LOC_Os06g02620Os.7738.1.S1_at8/116+926340..931584DnaJ C terminal region family protein, expressed
LOC_Os06g02630Os.32596.1.S1_x_at11/116+932239..935006expressed protein
LOC_Os06g02630OsAffx.27427.1.S1_at1/116+932239..935006expressed protein
LOC_Os06g02640OsAffx.27423.1.S1_at11/116+936167..939109hypothetical protein
LOC_Os06g02650Os.39915.1.A1_s_at11/116+940733..945388expressed protein
LOC_Os06g02650OsAffx.8785.1.S1_at2/116+940733..945388expressed protein
LOC_Os06g02650Os.32597.1.S1_x_at1/116+940733..945388expressed protein
LOC_Os06g02660OsAffx.27424.1.S1_at11/116+946958..948607hypothetical protein
LOC_Os06g02670OsAffx.27430.1.S1_at5/116+951808..952278hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000740biological_processnuclear membrane fusion
GO:0006457biological_processprotein folding
GO:0009553biological_processfemale gametophyte development
GO:0009558biological_processcellularization of megagametophyte
GO:0010197biological_processpolar nuclei fusion
GO:0010198biological_processsynergid death
GO:0051085biological_processchaperone cofactor dependent protein folding
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7738.1.S1_at--789--3531Chr06:926721..926829 (25 bp)
CATCCCTGCGAATTTGACACCGAGA
LOC_Os06g02620
Os.7738.1.S1_at--521--3111Chr06:926711..926735 (25 bp)
AATTTGACACCGAGACAGCGCGTGC
LOC_Os06g02620
Os.7738.1.S1_at--971--2151Chr06:926697..926721 (25 bp)
ACAGCGCGTGCTGATCGAGGAATTT
LOC_Os06g02620
Os.7738.1.S1_at--806--4651Chr06:926692..926716 (25 bp)
GCGTGCTGATCGAGGAATTTGCGAA
LOC_Os06g02620
Os.7738.1.S1_at--121--5231Chr06:926678..926702 (25 bp)
GAATTTGCGAAGGAAGAGCAAGCTG
LOC_Os06g02620
Os.7738.1.S1_at--619--2031Chr06:926399..926423 (25 bp)
ACTAGCATCAGTGAGACAGGCGGCA
LOC_Os06g02620
Os.7738.1.S1_at--1137--391Chr06:926393..926417 (25 bp)
ATCAGTGAGACAGGCGGCAGGATCC
LOC_Os06g02620
Os.7738.1.S1_at--727--5551Chr06:926343..926367 (25 bp)
GAAAGTATGGAACTCACGGTACCAA
LOC_Os06g02620
Os.7738.1.S1_at--326--6931Chr06:926339..926363 (25 bp)
GTATGGAACTCACGGTACCAACCTC
NONE
Os.7738.1.S1_at--896--8151Chr06:926335..926359 (25 bp)
GGAACTCACGGTACCAACCTCTGGA
NONE
Os.7738.1.S1_at--1039--7811Chr06:926326..926350 (25 bp)
GGTACCAACCTCTGGACTCGTGCCA
NONE
Target Sequence 
CATCCCTGCGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAGCAAGCTGAAGAGGAGANAA
GACGCAAAGGCAGCAGGAGCATCGGGATAGCTGATTTTAGGAGCGACCCGTACATTTGATTAGTGCTTTAGTCTCATCAT
ATATCGCGAGATAGAATAGGCTGCTGCCTGAAATTTGCAGGGGCAAGAAGATATAGTTTGGTTGGATGCATGGAATTTTA
CATGCCGACATATAGCAGTTTCAAATTTTGTAGCTGGGAATAATATACACCACGNCCGCCTGATGTTTGCAATCTCCTAA
TGTCACTAGCATCAGTGAGACAGGCGGCAGGATCCTGTATTGTATAATTTTGTGTGTTAAGAAAGTATGGAACTCACGGT
ACCAACCTCTGGACTCGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis