Browse Element(s) Details

Os.52636.1.S1_at

Description

gb:AK068442.1
DB_XREF= gi:32978460
TID=Os.52636.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52636 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157I02, full insert sequence.
FL= gb:AK068442.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02590	4/11	START domain-containing protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02550	Os.7910.1.S1_at	11/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02550	Os.44823.1.S1_x_at	10/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02560	Os.32618.1.S1_at	11/11	6	+	892175..895357	growth-regulating factor, putative, expressed
LOC_Os06g02560	OsAffx.29241.1.S1_s_at	1/11	6	+	892175..895357	growth-regulating factor, putative, expressed
LOC_Os06g02570	Os.8343.1.S1_at	11/11	6	+	901675..906047	Syntaxin 43, putative, expressed
LOC_Os06g02580	Os.32113.1.S1_at	11/11	6	+	907638..909323	high-affinity nickel-transport family protein, putative, expressed
LOC_Os06g02590	Os.52636.1.S1_at	4/11	6	+	912780..920283	START domain-containing protein, putative, expressed
LOC_Os06g02600	Os.5273.2.S1_x_at	10/11	6	+	921217..924267	DAG protein, chloroplast precursor, putative, expressed
LOC_Os06g02610	OsAffx.27445.2.S1_x_at	11/11	6	+	924433..925154	hypothetical protein
LOC_Os06g02610	OsAffx.27445.1.S1_x_at	4/11	6	+	924433..925154	hypothetical protein
LOC_Os06g02620	Os.44821.1.A1_x_at	10/11	6	+	926340..931584	DnaJ C terminal region family protein, expressed
LOC_Os06g02620	Os.7738.1.S1_at	8/11	6	+	926340..931584	DnaJ C terminal region family protein, expressed
LOC_Os06g02630	Os.32596.1.S1_x_at	11/11	6	+	932239..935006	expressed protein
LOC_Os06g02630	OsAffx.27427.1.S1_at	1/11	6	+	932239..935006	expressed protein
LOC_Os06g02640	OsAffx.27423.1.S1_at	11/11	6	+	936167..939109	hypothetical protein
LOC_Os06g02650	Os.39915.1.A1_s_at	11/11	6	+	940733..945388	expressed protein
LOC_Os06g02650	OsAffx.8785.1.S1_at	2/11	6	+	940733..945388	expressed protein
LOC_Os06g02650	Os.32597.1.S1_x_at	1/11	6	+	940733..945388	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0008289	molecular_function	lipid binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52636.1.S1_at--1119--565	1	Chr06:919813..919834 (22 bp)	GACATGGCTTTTCTTATACAGGCAA	LOC_Os06g02590
Os.52636.1.S1_at--299--911	1	Chr06:920223..920247 (25 bp)	TGCTGCACGGCTATCCAATATCGAA	LOC_Os06g02590
Os.52636.1.S1_at--958--309	1	Chr06:920239..920263 (25 bp)	AATATCGAACCCAGCTCAGCAATAG	LOC_Os06g02590
Os.52636.1.S1_at--332--483	1	Chr06:920252..920276 (25 bp)	GCTCAGCAATAGTTCCTGTACTTGA	LOC_Os06g02590
Os.52636.1.S1_at--619--973	1	Chr06:920321..920345 (25 bp)	TAATTCTTTGCTCGGAACTCCATTT	NONE
Os.52636.1.S1_at--72--655	1	Chr06:920447..920471 (25 bp)	GATTTTTCTGACACCATGCTAGTAG	NONE
Os.52636.1.S1_at--913--703	1	Chr06:920533..920557 (25 bp)	GTACAACTCAACGTGGTACCTTGCT	NONE
Os.52636.1.S1_at--516--697	1	Chr06:920574..920598 (25 bp)	GTAGCCAATTGTTGTCGATCTGACA	NONE
Os.52636.1.S1_at--970--385	1	Chr06:920593..920617 (25 bp)	CTGACACCTCAATTAGATGCTCTCT	NONE
Os.52636.1.S1_at--644--1073	1	Chr06:920636..920660 (25 bp)	TTGAACTCGTTATCACTTGCTTGGC	NONE
Os.52636.1.S1_at--134--207	1	Chr06:920650..920674 (25 bp)	ACTTGCTTGGCCTTTGAGATTCCTA	NONE

Target Sequence

GACATGGCTTTTCTTATACAGGCAAACACATACGACGAGCTCCCGGAGCAACTTNCTAGGTGCTGCACGGCTATCCAATA
TCGAACCCAGCTCAGCAATAGTTCCTGTACTTGATAAATAGCTCTTCAAGGGAATGAAATCAATTGAAGCAGATTCTTTA
ATTCTTTGCTCGGAACTCCATTTTCTGTTGATTNGCTGCAGCAGTTTGCAGTTTGAGACGGCAAAAGTGTCATTTCAGGA
CTGGAAGCGCGACCATATCCTCCAATCNGNCTTTACAGTTTTCAGATTTTTCTGACACCATGCTAGTAGGTATAGATAAC
ATATAGTATGTGATTATACGGCATTATACATACAGAAAAAACCAATTCATGTACAACTCAACGTGGTACCTTGCTNTTTT
TTTTTTTCTCTTTGTAGCCAATTGTTGTCGATCTGACACCTCAATTAGATGCTCTCTTNCTCTCCTGGATGTAAATTGAA
CTCGTTATCACTTGCTTGGCCTTTGAGATTCCTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis