Browse Element(s) Details

Os.44821.1.A1_x_at

Description

gb:CB619550
DB_XREF= gi:29614537
DB_XREF=OSIIEa04C24.r
CLONE=OSIIEa04C24
TID=Os.44821.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.44821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) DnaJ protein-like~contains EST AU181927(C61864) (OSJNBa0019F11.25), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02620	10/11	DnaJ C terminal region family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02570	Os.8343.1.S1_at	11/11	6	+	901675..906047	Syntaxin 43, putative, expressed
LOC_Os06g02580	Os.32113.1.S1_at	11/11	6	+	907638..909323	high-affinity nickel-transport family protein, putative, expressed
LOC_Os06g02590	Os.52636.1.S1_at	4/11	6	+	912780..920283	START domain-containing protein, putative, expressed
LOC_Os06g02600	Os.5273.2.S1_x_at	10/11	6	+	921217..924267	DAG protein, chloroplast precursor, putative, expressed
LOC_Os06g02610	OsAffx.27445.2.S1_x_at	11/11	6	+	924433..925154	hypothetical protein
LOC_Os06g02610	OsAffx.27445.1.S1_x_at	4/11	6	+	924433..925154	hypothetical protein
LOC_Os06g02620	Os.44821.1.A1_x_at	10/11	6	+	926340..931584	DnaJ C terminal region family protein, expressed
LOC_Os06g02620	Os.7738.1.S1_at	8/11	6	+	926340..931584	DnaJ C terminal region family protein, expressed
LOC_Os06g02630	Os.32596.1.S1_x_at	11/11	6	+	932239..935006	expressed protein
LOC_Os06g02630	OsAffx.27427.1.S1_at	1/11	6	+	932239..935006	expressed protein
LOC_Os06g02640	OsAffx.27423.1.S1_at	11/11	6	+	936167..939109	hypothetical protein
LOC_Os06g02650	Os.39915.1.A1_s_at	11/11	6	+	940733..945388	expressed protein
LOC_Os06g02650	OsAffx.8785.1.S1_at	2/11	6	+	940733..945388	expressed protein
LOC_Os06g02650	Os.32597.1.S1_x_at	1/11	6	+	940733..945388	expressed protein
LOC_Os06g02660	OsAffx.27424.1.S1_at	11/11	6	+	946958..948607	hypothetical protein
LOC_Os06g02670	OsAffx.27430.1.S1_at	5/11	6	+	951808..952278	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0000740	biological_process	nuclear membrane fusion
GO:0006457	biological_process	protein folding
GO:0009553	biological_process	female gametophyte development
GO:0009558	biological_process	cellularization of megagametophyte
GO:0010197	biological_process	polar nuclei fusion
GO:0010198	biological_process	synergid death
GO:0051085	biological_process	chaperone cofactor dependent protein folding
GO:0005739	cellular_component	mitochondrion

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.44821.1.A1_x_at--764--569	1	Chr06:927296..927315 (20 bp)	GACTCAGGCAATTTTGGGCGGGACA	LOC_Os06g02620
Os.44821.1.A1_x_at--947--757	1	Chr06:927281..927305 (25 bp)	GGGCGGGACAGTTCAGGTTCCAACT	LOC_Os06g02620
Os.44821.1.A1_x_at--471--791	1	Chr06:927266..927290 (25 bp)	GGTTCCAACTCTCTCTGGAGATGTA	LOC_Os06g02620
Os.44821.1.A1_x_at--706--231	1	NONE	AAAGGTCAAGCCTGGTACTCAGCCT	NONE
Os.44821.1.A1_x_at--579--859	1	Chr06:927138..927162 (25 bp)	TGGTACTCAGCCTGGCCAAAAGGTG	LOC_Os06g02620
Os.44821.1.A1_x_at--1066--603	1	Chr06:926833..926857 (25 bp)	GAGATCAGTATGTCCACTTCAATGT	LOC_Os06g02620
Os.44821.1.A1_x_at--256--809	1	Chr06:926603..926627 (25 bp)	GGAGCGACCCGTACATTTGATTAGT	LOC_Os06g02620
Os.44821.1.A1_x_at--828--907	1	Chr06:926579..926603 (25 bp)	TGCTTTAGTCTCATCATATATCGCG	LOC_Os06g02620
Os.44821.1.A1_x_at--128--761	1	Chr06:926447..926471 (25 bp)	GGGAATAATATACACCACGCCGCCT	LOC_Os06g02620
Os.44821.1.A1_x_at--939--447	1	Chr06:926426..926450 (25 bp)	GCCTGATGTTTGCAATCTCCTAATG	LOC_Os06g02620
Os.44821.1.A1_x_at--753--499	1	Chr06:926384..926407 (24 bp)	GCAGGCGGCAGGATCCTGTATTGTA	LOC_Os06g02620

Target Sequence

GACTCAGGCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTTCTAAAGGTCAAGCCTGGTACTC
AGCCTGGCCAAAAGGTGGTTNTGAGAGGAAAAGGAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCAC
TTCAATGTCAACATCCCTGNGNNNTNNANNNNGNNNCNNNNNNTNCTNNNNGNNNANNNNNCNNNNNNAGANCANNNTNN
ANANGAGAAAGACGCAAAGGCAGCAGGAGCATCGGGATAGCTGATTTTAGGAGCGACCCGTACATTTGATTAGTGCTTTA
GTCTCATCATATATCGCGAGATAGAATAGGCTGCTGCCTGAAATTTGCAGGGGCAAGAAGATATAGTTTGGTTGGATGCA
TGGAATTTTACATGCCGACATATAGCAGTTTCAAATTTTGTAGCTGGGAATAATATACACCACGCCGCCTGATGTTTGCA
ATCTCCTAATGTCACTAGCATCATTGGGGCAGGCGGCAGGATCCTGTATTGTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis