Browse Element(s) Details

Os.44823.1.S1_x_at

Description

gb:CB683800
DB_XREF= gi:29687525
DB_XREF=OSJNEf12L01.r
CLONE=OSJNEf12L01
TID=Os.44823.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.44823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) serinethreonine-protein kinase Mak (male germ cell-associated kinase)-like (OSJNBa0019F11.17), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02550	10/11	Serine/threonine-protein kinase MAK, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02490	Os.4518.1.S1_a_at	11/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02490	Os.4518.2.S1_x_at	9/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02500	Os.20570.1.S1_x_at	11/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02500	Os.20570.2.S1_at	10/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02510	Os.12590.1.S1_at	11/11	6	+	866370..868825	60S ribosomal protein L13-2, putative, expressed
LOC_Os06g02520	OsAffx.27422.1.S1_at	11/11	6	+	870781..873942	expressed protein
LOC_Os06g02530	Os.9159.2.S1_x_at	11/11	6	+	874377..875368	expressed protein
LOC_Os06g02540	Os.12752.3.S1_x_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02540	Os.12752.1.S1_a_at	11/11	6	+	875862..879529	expressed protein
LOC_Os06g02550	Os.7910.1.S1_at	11/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02550	Os.44823.1.S1_x_at	10/11	6	+	884835..891704	Serine/threonine-protein kinase MAK, putative, expressed
LOC_Os06g02560	Os.32618.1.S1_at	11/11	6	+	892175..895357	growth-regulating factor, putative, expressed
LOC_Os06g02560	OsAffx.29241.1.S1_s_at	1/11	6	+	892175..895357	growth-regulating factor, putative, expressed
LOC_Os06g02570	Os.8343.1.S1_at	11/11	6	+	901675..906047	Syntaxin 43, putative, expressed
LOC_Os06g02580	Os.32113.1.S1_at	11/11	6	+	907638..909323	high-affinity nickel-transport family protein, putative, expressed
LOC_Os06g02590	Os.52636.1.S1_at	4/11	6	+	912780..920283	START domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.44823.1.S1_x_at--510--319	1	Chr06:890927..890951 (25 bp)	CAATCCTCCTACTATCCTGAAAAAT	LOC_Os06g02550
Os.44823.1.S1_x_at--441--113	1	Chr06:890990..891014 (25 bp)	AGTGCTGTTTCCTAGTAGTGTCGTA	LOC_Os06g02550
Os.44823.1.S1_x_at--732--663	1	Chr06:891018..891042 (25 bp)	GTTGTGAATCTCATACCCCAATAAA	LOC_Os06g02550
Os.44823.1.S1_x_at--1047--229	1	Chr06:891042..891066 (25 bp)	AAATGGAGATGTGCCAGCCTGCTGG	LOC_Os06g02550
Os.44823.1.S1_x_at--971--755	1	NONE	GGGCGCGTCTGTATGGAAACCTTGT	NONE
Os.44823.1.S1_x_at--323--547	1	Chr06:891188..891212 (25 bp)	GAACTGTGTGTTATTTGCTCCCTAG	LOC_Os06g02550
Os.44823.1.S1_x_at--910--573	1	Chr06:891214..891238 (25 bp)	GACGTGACGCTTGTTGAGTCGTTTC	LOC_Os06g02550
Os.44823.1.S1_x_at--422--737	1	Chr06:891265..891289 (25 bp)	GTGACATCGCAGCTACTACAGTACT	LOC_Os06g02550
Os.44823.1.S1_x_at--119--191	1	Chr06:891331..891355 (25 bp)	ACGTGGTGCGGCTATGCTTGTCCAG	LOC_Os06g02550
Os.44823.1.S1_x_at--462--493	1	Chr06:891346..891370 (25 bp)	GCTTGTCCAGTTGTTTATGCACCAT	LOC_Os06g02550
Os.44823.1.S1_x_at--1098--69	1	Chr06:891381..891405 (25 bp)	ATGAGTGCATGACCAGCGCGTCTGC	LOC_Os06g02550

Target Sequence

CAATCCTCCTACTATCCTGAAAAATAAGAAGCCAACAGAGCCGATCTCCCTCGAANAGNTTTTTAGTGCTGTTTCCTAGT
AGTGTCGTATTGGTTGTGAATCTCATACCCCAATAAAAATGGAGATGTGCCAGCCTGCTGGTACTCCTATCTTGCCTTGC
ATTGGCATCCATCCATGACAGCACCTCGAGGATGCAGCTGATCCTCGGGGGCATGCAAGCATGGCCGGGCGCGTCTGTAT
GGAAACCTTGTGTTTCGAGTCGGAACTGTGTGTTATTTGCTCCCTAGTGACGTGACGCTTGTTGAGTCGTTTCTGCTCTG
CGTTGGCTGGCCCCTGCCTGTGACATCGCAGCTACTACAGTACTACTACTACTATGTCAAATATTGTTATAGGACTATTA
CCACTACGTGGTGCGGCTATGCTTGTCCAGTTGTTTATGCACCATGCAGGCATGCATGAGTGCATGACCAGCGCGTCTGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis