Browse Element(s) Details

Os.44826.1.S1_at

Description

gb:BM421678
DB_XREF= gi:18388466
DB_XREF=V018A05
CLONE=V018A05
TID=Os.44826.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10; hypothetical protein (AL035538) (Gene), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02400	5/11	F-box domain containing protein
LOC_Os06g46840	1/11	pentatricopeptide, putative

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02370	Os.4506.3.S1_x_at	11/11	6	+	795317..799813	expressed protein
LOC_Os06g02380	Os.51795.1.S1_at	11/11	6	+	810040..815535	RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02380	Os.12628.1.S1_at	11/11	6	+	810040..815535	RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02390	OsAffx.4696.1.S1_at	11/11	6	+	818374..819357	ADP-ribosylation factor 1, putative
LOC_Os06g02400	Os.44826.1.S1_at	5/11	6	+	824557..828064	F-box domain containing protein
LOC_Os06g02410	OsAffx.30517.2.A1_at	11/11	6	+	827718..829762	expressed protein
LOC_Os06g02410	Os.4509.1.S1_x_at	10/11	6	+	827718..829762	expressed protein
LOC_Os06g02420	Os.4510.1.S1_at	6/11	6	+	831842..833940	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02430	Os.15602.1.S1_x_at	11/11	6	+	834630..838033	expressed protein
LOC_Os06g02430	Os.15602.1.S1_at	10/11	6	+	834630..838033	expressed protein
LOC_Os06g02440	Os.4513.1.S1_at	11/11	6	+	840323..843186	expressed protein
LOC_Os06g02450	Os.53204.1.S1_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02450	OsAffx.10364.1.S1_x_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02460	Os.55439.1.S1_at	11/11	6	+	849898..851193	expressed protein
LOC_Os06g02460	OsAffx.1579.1.S1_x_at	2/11	6	+	849898..851193	expressed protein
LOC_Os06g02470	Os.4516.1.S1_a_at	11/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_at	9/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_x_at	7/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.44826.1.S1_at--903--709	1	Chr06:827634..827658 (25 bp)	GTCACGCCGGACTTGTCGAGGAGGG	LOC_Os06g02400
Os.44826.1.S1_at--242--817	3	Chr06:28433060..28433084 (25 bp)	GGAACCTCGCATCGAGCACTACGGC	LOC_Os06g46840
Os.44826.1.S1_at--1006--821	1	Chr06:827767..827791 (25 bp)	GGCAATGCCAGTACACTCCGACGCG	LOC_Os06g02400
Os.44826.1.S1_at--212--581	1	Chr06:827786..827810 (25 bp)	GACGCGCTCATCTGGAGCTCGCTGC	LOC_Os06g02400
Os.44826.1.S1_at--674--837	1	Chr06:827888..827912 (25 bp)	GGCGACTACGTGCTCATGTCGAACA	LOC_Os06g02400
Os.44826.1.S1_at--769--1065	1	Chr06:828052..828076 (25 bp)	TTCCATCCGATAAAACCACAACAAG	NONE
Os.44826.1.S1_at--457--143	1	Chr06:828086..828107 (22 bp)	AGAACAGATTATCCGATTGATCCTG	NONE
Os.44826.1.S1_at--142--55	4	Chr10:11893028..11893061 (25 bp)	ATCCGATTGATCCTGTAGATAACAA	NONE
Os.44826.1.S1_at--270--657	1	Chr06:828122..828146 (25 bp)	GATTCATACAACCAACGACGCAAGA	NONE
Os.44826.1.S1_at--846--259	1	Chr06:828135..828159 (25 bp)	AACGACGCAAGATTTTCACTGGAAA	NONE
Os.44826.1.S1_at--817--1051	1	Chr06:828149..828173 (25 bp)	TTCACTGGAAATTTTCTAGTACTAG	NONE

Target Sequence

GTCACGCCGGACTTGTCGAGGAGGGGCTCCAGCAACTCAACGCCATGCCGGAACCTCGCATCGAGCACTACGGCTGCGTC
GTCNGACATGCTCGNCCGCNCCGGGAGACTAGACAAGGCNAGAGGAGCTCATCGCGGCAATGCCAGTACACTCCGACGCG
CTCATCTGGAGCTCGCTGCTCGCCGCATGCCGCGCGCACGGCGACGTCGAGCGCGCCGAGCGGGTGATGCGACGGCGCGT
GGCCGACGCGGACGCCGGCGACTACGTGCTCATGTCGAACACGTACGCGTCGAATGGCCGGCACNGGTGAGGCGGTGAAG
GTGAGGGGGCAGATGAGGAGGAACGAGATCGACAAGGTCCCCGGCTGCAGCCTCATCGAGATCGACGGCGTCGTGCACGA
ATTCAAANCANTCCCAGCAAATTCCATCCGATAAAACCACAACAAGATTCATCAAAGAACAGATTATCCGATTGATCCTG
TAGATAACAAGATTCATACAACCAACGACGCAAGATTTTCACTGGAAATTTTCTAGTACTAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis