Browse Element(s) Details


Os.4506.3.S1_x_at

Description gb:AK061817.1
DB_XREF= gi:32971835
TID=Os.4506.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU082452(S2330),AU058131(S5384),D40386(S2330), D23841(R0349) correspond to a region of the predicted gene.~hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B07, full insert sequence.
FL= gb:AK061817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0237011/11expressed protein
LOC_Os12g161801/11Phospholipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02320Os.31468.2.S1_at10/116+775290..775691hypothetical protein
LOC_Os06g02330Os.31468.1.S1_at10/116+776223..778771expressed protein
LOC_Os06g02340Os.23621.1.S1_a_at11/116+778996..781324F-box domain containing protein, expressed
LOC_Os06g02350OsAffx.15232.1.S1_x_at11/116+781722..782180Skp1 family, dimerisation domain containing protein
LOC_Os06g02350Os.44828.1.A1_at1/116+781722..782180Skp1 family, dimerisation domain containing protein
LOC_Os06g02360Os.44828.1.A1_at11/116+785864..786614Skp1 family, dimerisation domain containing protein, expressed
LOC_Os06g02370Os.4506.3.S1_x_at11/116+795317..799813expressed protein
LOC_Os06g02380Os.51795.1.S1_at11/116+810040..815535RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02380Os.12628.1.S1_at11/116+810040..815535RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02390OsAffx.4696.1.S1_at11/116+818374..819357ADP-ribosylation factor 1, putative
LOC_Os06g02400Os.44826.1.S1_at5/116+824557..828064F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4506.3.S1_x_at--259--811Chr06:795998..796022 (25 bp)
ATGGTGTGCTGTACTCATTTGGTCG
LOC_Os06g02370
Os.4506.3.S1_x_at--1019--211Chr06:795982..796006 (25 bp)
ATTTGGTCGCATTCTGCTGCTCGAT
LOC_Os06g02370
Os.4506.3.S1_x_at--1077--7311Chr06:795935..795959 (25 bp)
GTGCTTTTGCGGTGTGGTATGCATT
LOC_Os06g02370
Os.4506.3.S1_x_at--635--4951Chr06:795915..795939 (25 bp)
GCATTTGTACGCTGCATTGGTGCTA
LOC_Os06g02370
Os.4506.3.S1_x_at--688--31Chr06:795900..795924 (25 bp)
ATTGGTGCTATGATTGGCTTCGCTG
LOC_Os06g02370
Os.4506.3.S1_x_at--945--8551Chr06:795850..795874 (25 bp)
TGGAGGATCGTTTGCTGCTGCGTTC
LOC_Os06g02370
Os.4506.3.S1_x_at--700--1551Chr06:795819..795843 (25 bp)
AGCTTCCTCGGCATCATTGTTCTGA
LOC_Os06g02370
Os.4506.3.S1_x_at--578--3511Chr06:795697..795721 (25 bp)
CATGAGTGCGGTTGCCGATTCCGGC
LOC_Os06g02370
Os.4506.3.S1_x_at--189--7371Chr06:795591..795615 (25 bp)
GTGAGAGGGATTTGTTCTTCTTTCT
LOC_Os06g02370
Os.4506.3.S1_x_at--650--5631Chr06:795540..795564 (25 bp)
GACACTGTTAATTCGGTGCTTTGCC
LOC_Os06g02370
Os.4506.3.S1_x_at--977--712Chr12:9245374..9245394 (21 bp)
ATGATATGGTTCTTTGTTCATCGCC
LOC_Os12g16180
Target Sequence 
ATGGTGTGCTGTACTCATTTGGTCGCATTCTGCTGCTCGATGCCTCGCCACCAGGGAAGGAGGGTGCTTTTGCGGTGTGG
TATGCATTTGTACGCTGCATTGGTGCTATGATTGGCTTCGCTGCTGCATCCGCTGGGCCTGGGCGTGCTGGAGGATCGTT
TGCTGCTGCGTTCCTAGGCAGCTTCCTCGGCATCATTGTTCTGATCTTTGGTAATGTGAGCAACATCGGGGCGCTGAAGG
CTGCTGGGCATCTGAAGGGAATGGAAGACGAGAAGAGGCTGGGCATGGAGAAAGGGGAAGGCATGAGTGCGGTTGCCGAT
TCCGGCGAGGGAAGGGGGAGGGTATGATGATGATTAAATGGGCTTGTGGGAAGGAAAGATTGGAAAATTGCTGTGGAGGT
TGTGTTTGTGAGAGGGATTTGTTCTTCTTTCTTGTTTCTTTCTTGTTCATGTTTCAGTGACACTGTTAATTCGGTGCTTT
GCCCCCCTTGGATGCATGATGATGATGACATAGTGGTAGAGGAAGTGTGCTAGTTGTTAATGTGTTATTCTTTGCTTGGA
AGACAATTGTAACTGATGATATGGTTCTTTGTTCATCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4506.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis