Browse Element(s) Details


OsAffx.15232.1.S1_x_at

Description tigr:9634.m00135
TID=OsAffx.15232.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Skp1 family, dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0235011/11Skp1 family, dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02304OsAffx.16205.1.S1_at2/116+757634..764184retrotransposon protein, putative, unclassified
LOC_Os06g02320Os.31468.2.S1_at10/116+775290..775691hypothetical protein
LOC_Os06g02330Os.31468.1.S1_at10/116+776223..778771expressed protein
LOC_Os06g02340Os.23621.1.S1_a_at11/116+778996..781324F-box domain containing protein, expressed
LOC_Os06g02350OsAffx.15232.1.S1_x_at11/116+781722..782180Skp1 family, dimerisation domain containing protein
LOC_Os06g02350Os.44828.1.A1_at1/116+781722..782180Skp1 family, dimerisation domain containing protein
LOC_Os06g02360Os.44828.1.A1_at11/116+785864..786614Skp1 family, dimerisation domain containing protein, expressed
LOC_Os06g02370Os.4506.3.S1_x_at11/116+795317..799813expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15232.1.S1_x_at--85--8831Chr06:782122..782146 (25 bp)
TGATCAAGGTGATGAGCTCCGACGG
LOC_Os06g02350
OsAffx.15232.1.S1_x_at--929--1371Chr06:782095..782119 (25 bp)
AGACCTTCGAGATGACGGAGGCGGC
LOC_Os06g02350
OsAffx.15232.1.S1_x_at--817--3531Chr06:782005..782029 (25 bp)
CATCCCTCTCCAAGATCATCGAGTA
LOC_Os06g02350
OsAffx.15232.1.S1_x_at--753--1871Chr06:781918..781942 (25 bp)
ACGAGGAGTTGATCGACGTGGACAC
LOC_Os06g02350
OsAffx.15232.1.S1_x_at--155--531Chr06:781907..781931 (25 bp)
ATCGACGTGGACACGGACACGCTGT
LOC_Os06g02350
OsAffx.15232.1.S1_x_at--9--8531Chr06:781900..781924 (25 bp)
TGGACACGGACACGCTGTACCACCT
LOC_Os06g02350
OsAffx.15232.1.S1_x_at--701--4131Chr06:781888..781912 (25 bp)
CGCTGTACCACCTGCTGATGGCGGG
LOC_Os06g02350
OsAffx.15232.1.S1_x_at--317--8711Chr06:781842..781866 (25 bp)
TGTCCTGGAGCTGGCCGTCCAGCGA
LOC_Os06g02350
OsAffx.15232.1.S1_x_at--304--7271Chr06:781826..781850 (25 bp)
GTCCAGCGAACGGCGGAGCTGATCA
LOC_Os06g02350
OsAffx.15232.1.S1_x_at--300--9331Chr06:781793..781817 (25 bp)
TCGCCGGAGGAGATCAGGGACACCT
LOC_Os06g02350
OsAffx.15232.1.S1_x_at--523--1271Chr06:781783..781807 (25 bp)
AGATCAGGGACACCTTCAAGATCGC
LOC_Os06g02350
Target Sequence 
TGATCAAGGTGATGAGCTCCGACGGGGAGACCTTCGAGATGACGGAGGCGGCGGCGAGCATGACGGCTGCGCCGACGGCG
GCGCCGGCATCCCTCTCCAAGATCATCGAGTACTGCACCAAGCACGCCGCCGTCGAAGGCCGCAGCACGGCGGCGGCGGA
GCTGAAGAGGTTCGACGAGGAGTTGATCGACGTGGACACGGACACGCTGTACCACCTGCTGATGGCGGGGAACTTGATGG
GCGTGGAGGGTGTCCTGGAGCTGGCCGTCCAGCGAACGGCGGAGCTGATCAGGGGCAAGTCGCCGGAGGAGATCAGGGAC
ACCTTCAAGATCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15232.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis