Browse Element(s) Details


Os.31468.1.S1_at

Description gb:AK107286.1
DB_XREF= gi:32992495
TID=Os.31468.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B06, full insert sequence.
FL= gb:AK107286.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0233010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02280NANA6+753704..754111hypothetical protein
LOC_Os06g02290OsAffx.22603.1.S1_at11/116+755270..755926hypothetical protein
LOC_Os06g02304OsAffx.16205.1.S1_at2/116+757634..764184retrotransposon protein, putative, unclassified
LOC_Os06g02320Os.31468.2.S1_at10/116+775290..775691hypothetical protein
LOC_Os06g02330Os.31468.1.S1_at10/116+776223..778771expressed protein
LOC_Os06g02340Os.23621.1.S1_a_at11/116+778996..781324F-box domain containing protein, expressed
LOC_Os06g02350OsAffx.15232.1.S1_x_at11/116+781722..782180Skp1 family, dimerisation domain containing protein
LOC_Os06g02350Os.44828.1.A1_at1/116+781722..782180Skp1 family, dimerisation domain containing protein
LOC_Os06g02360Os.44828.1.A1_at11/116+785864..786614Skp1 family, dimerisation domain containing protein, expressed
LOC_Os06g02370Os.4506.3.S1_x_at11/116+795317..799813expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31468.1.S1_at--170--4431Chr06:776550..776574 (25 bp)
GCCAGTGATTGGCACACGCACGAGT
LOC_Os06g02330
Os.31468.1.S1_at--904--1131NONE
AGTGCCCTGCTCTTATTAGCTTCTT
NONE
Os.31468.1.S1_at--66--4211Chr06:776493..776517 (25 bp)
CCCCTTGTGATGTAGAGCAGAGACT
LOC_Os06g02330
Os.31468.1.S1_at--465--5991Chr06:776474..776498 (25 bp)
GAGACTTGTGCAACTTGGCCTAGAA
LOC_Os06g02330
Os.31468.1.S1_at--687--6371Chr06:776441..776465 (25 bp)
GATCCTCATGGTGGTCTTTATGTCT
LOC_Os06g02330
Os.31468.1.S1_at--48--6791Chr06:776420..776444 (25 bp)
GTCTAGTTTAACACTTGCAGTCGTT
LOC_Os06g02330
Os.31468.1.S1_at--319--151Chr06:776382..776406 (25 bp)
ATTAGCTGCATTACCATCTGATAGT
LOC_Os06g02330
Os.31468.1.S1_at--581--10051Chr06:776322..776346 (25 bp)
TAGTTGTTGCTTTTCCACTGGTGAT
LOC_Os06g02330
Os.31468.1.S1_at--283--10051Chr06:776295..776319 (25 bp)
TAGGTAATGTTTCGTTCTGTAAGGG
LOC_Os06g02330
Os.31468.1.S1_at--303--6731Chr06:776258..776282 (25 bp)
GTTCTTCTTCACAGCAATGGTTTGG
LOC_Os06g02330
Os.31468.1.S1_at--608--7072Chr06:776224..776248 (25 bp)
GTAATGCTTGTGCACTTTGTCTTGT
LOC_Os06g02330
Target Sequence 
GCCAGTGATTGGCACACGCACGAGTGCCCTGCTCTTATTAGCTTCTTCTAAAATTGCCCCCTTGTGATGTAGAGCAGAGA
CTTGTGCAACTTGGCCTAGAAATCTAGGAGATCCTCATGGTGGTCTTTATGTCTAGTTTAACACTTGCAGTCGTTTTGTA
GTTCAGTTATTAGCTGCATTACCATCTGATAGTAGGGTGTGACTGCACTGGATGCAAGTGTAGTTAACTAGTTGTTGCTT
TTCCACTGGTGATGGTAGGTAATGTTTCGTTCTGTAAGGGTTTGGAACTTTTGTTCTTCTTCACAGCAATGGTTTGGAAC
ACTAATGTAATGCTTGTGCACTTTGTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis