Browse Element(s) Details


Os.23621.1.S1_a_at

Description gb:AK101235.1
DB_XREF= gi:32986444
TID=Os.23621.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23621 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031K01, full insert sequence.
FL= gb:AK101235.1 gb:AK122025.1 gb:AK062095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0234011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02280NANA6+753704..754111hypothetical protein
LOC_Os06g02290OsAffx.22603.1.S1_at11/116+755270..755926hypothetical protein
LOC_Os06g02304OsAffx.16205.1.S1_at2/116+757634..764184retrotransposon protein, putative, unclassified
LOC_Os06g02320Os.31468.2.S1_at10/116+775290..775691hypothetical protein
LOC_Os06g02330Os.31468.1.S1_at10/116+776223..778771expressed protein
LOC_Os06g02340Os.23621.1.S1_a_at11/116+778996..781324F-box domain containing protein, expressed
LOC_Os06g02350OsAffx.15232.1.S1_x_at11/116+781722..782180Skp1 family, dimerisation domain containing protein
LOC_Os06g02350Os.44828.1.A1_at1/116+781722..782180Skp1 family, dimerisation domain containing protein
LOC_Os06g02360Os.44828.1.A1_at11/116+785864..786614Skp1 family, dimerisation domain containing protein, expressed
LOC_Os06g02370Os.4506.3.S1_x_at11/116+795317..799813expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23621.1.S1_a_at--608--3491Chr06:780816..780840 (25 bp)
CAGGCTCTCTTTGTCAACCTTGATG
LOC_Os06g02340
Os.23621.1.S1_a_at--185--7651Chr06:780840..780864 (25 bp)
GGGAGGGACCCTACATTCTCTTGCA
LOC_Os06g02340
Os.23621.1.S1_a_at--551--9391Chr06:780955..780979 (25 bp)
TCGGTCAGCCAGTTCCTAGTAGAAT
LOC_Os06g02340
Os.23621.1.S1_a_at--136--10051Chr06:780971..780995 (25 bp)
TAGTAGAATAGACCGCGTCCCAGAC
LOC_Os06g02340
Os.23621.1.S1_a_at--475--6731Chr06:781054..781078 (25 bp)
GTTCTCATCAAGTTTTAGCCAGCGT
LOC_Os06g02340
Os.23621.1.S1_a_at--646--1631Chr06:781074..781098 (25 bp)
AGCGTTGCACAAGCCATATCCGTAC
LOC_Os06g02340
Os.23621.1.S1_a_at--972--4431Chr06:781086..781110 (25 bp)
GCCATATCCGTACTTGCTAGTGTGA
LOC_Os06g02340
Os.23621.1.S1_a_at--560--2971Chr06:781114..781138 (25 bp)
AATGGTTTCTTGACCTGTGGCATAT
LOC_Os06g02340
Os.23621.1.S1_a_at--991--5011Chr06:781190..781214 (25 bp)
GCAGGTTCTTGCATGTACTGTGCAG
LOC_Os06g02340
Os.23621.1.S1_a_at--279--9931Chr06:781205..781229 (25 bp)
TACTGTGCAGGGTTGGTCTATGTTC
LOC_Os06g02340
Os.23621.1.S1_a_at--1102--7371Chr06:781231..781255 (25 bp)
GTGACCATGTGAATGCTGCCTTAAT
LOC_Os06g02340
Target Sequence 
CAGGCTCTCTTTGTCAACCTTGATGGGAGGGACCCTACATTCTCTTGCACGAGCCCTGAAAGATGGGGCGGAAAGAGTAA
CTGGATTTATGTTGCGAAACCATCTGGAGATTCTGGTGAACCTTGGACTGCGGTCGAGCTCGGTCAGCCAGTTCCTAGTA
GAATAGACCGCGTCCCAGACTTTCAAGTAGACAACATGTGGGTGGTACCCAGTTTGATTTATGATGTCAACCAATGATGT
TCTCATCAAGTTTTAGCCAGCGTTGCACAAGCCATATCCGTACTTGCTAGTGTGATTTAATGGTTTCTTGACCTGTGGCA
TATGTATGGATTCTTGTAAGAGTACACTGAAGTTGTATCTGTAGTATGAGAAATGCAGGTTCTTGCATGTACTGTGCAGG
GTTGGTCTATGTTCTGTGACCATGTGAATGCTGCCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23621.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis